User: biostR

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biostR0
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Posts by biostR

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Comment: C: Retrieving sequences from Ensembl Archive
... biomaRt v2.32.1 is installed which does not allow "genomic" as the seqType. If I try I get the following: Error in biomaRt::getSequence(chromosome = "X", start = 100639991, end = 100644991, : Please specify the type of sequence that needs to be retrieved when using biomaRt in web servic ...
written 10 months ago by biostR0
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Retrieving sequences from Ensembl Archive
... Hi, I am looking for a way to retrieve DNA sequences from Ensembl May 2017 archive, based on coordinates. I thought using Biomart package would be useful for getting DNA sequences, however, it did not work. Apparently, sequence type (seqType, type) is required for obtaining a sequence using getSeq ...
ensembl dna sequence ensembl archive written 10 months ago by biostR0 • updated 10 months ago by Emily_Ensembl18k
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(Closed) RSQLite reverse dependencies
... Hi, This is the first time I am asking a question online. I could not find a way for solving this. I updated R to the latest version. When I tried to use latest version of affycoretools package an error message told me that I should use an updated version of RSQLite: "...namespace ‘RSQLite’ 1.1- ...
R written 22 months ago by biostR0 • updated 20 months ago by Biostar ♦♦ 20

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