User: krzysieksobieszek

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Posts by krzysieksobieszek

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Comment: C: Visualize genome and blast hits
... karyoploteR looks nice and accurate. It might be hell giving it all the arguments but it's looking like it might get the job done. The problem is I can't install it on my machine. I have R 3.4 and Bioconductor 3.5. I was allready trying on installing packages by hand and updating Bioconductor in R b ...
written 9 weeks ago by krzysieksobieszek0 • updated 9 weeks ago by WouterDeCoster21k
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Comment: C: Visualize genome and blast hits
... Unfortunately BRIG doesn't work with my data (it's too big) and I also have some issues with making BioGraPy working. First there was the installation issues on declare.namespace part and with directories during installation but just when I thought I have overcome them and try to run some test code ...
written 9 weeks ago by krzysieksobieszek0 • updated 9 weeks ago by WouterDeCoster21k
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Comment: A: Visualize genome and blast hits
... I have already tried circos before and it's not exactly doing the job (or maybe it is but I have definitely too many sequences to make it in one table showing all the dependencies). I forgotten about IGV but it's also not very suitable since it's mostly oriented on expression data which I don't have ...
written 9 weeks ago by krzysieksobieszek0
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Visualize genome and blast hits
... Hi! I have a few sets of multiple fasta files (mostly genes and huge set of markers) in .fasta formatted with only name tags (no separated description or something) and genome sequence in multiple fasta .fa file (it's formatted similarly as previous as 21 superscaffolds/chromosomes). I also have BLA ...
gene R blast genome written 9 weeks ago by krzysieksobieszek0 • updated 9 weeks ago by jrj.healey2.4k

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