User: nattzy94

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nattzy9410
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Posts by nattzy94

<prev • 16 results • page 1 of 2 • next >
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Comment: C: How to compare the similarity of a dataset against a larger dataset and plot a h
... Thanks for the replies! My data is in a single column and contains information about types of SNPs in the format Chr1_Pos_A_T for example. This is all stored in a single column in a text file. ...
written 25 days ago by nattzy9410
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Comment: C: How to compare the similarity of a dataset against a larger dataset and plot a h
... Thanks for the reply! My data is in a single column and contains information about types of SNPs in the format Chr1_Pos_A_T for example. This is all stored in a single column in a text file. ...
written 25 days ago by nattzy9410
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How to compare the similarity of a dataset against a larger dataset and plot a heat map?
... I have datasets containing mutations for 26 samples (so 26 different sets of data) and I want to compare how similar they are to themselves. So for example, I would like to compare how Sample 1 is similar to Sample 1 to 26 for each of the 26 samples. At the end, I hope to get something like a heat m ...
R heat map written 26 days ago by nattzy9410 • updated 25 days ago by Bioaln210
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"Error: 1: Space required after the Public Identifier 2: SystemLiteral " or ' expected" when running PubMedWorcloud
... I am using an R package called 'PubMedWordcloud' and I get the following error when I try to retrieve the abstracts of a large number of PMIDs (Pubmed IDs): > pmids <- getPMIDsByKeyWords(keys="candida albicans", n=3000) > abstracts=getAbstracts(pmids) Space required after the ...
R written 5 weeks ago by nattzy9410 • updated 5 weeks ago by Ram12k
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Answer: A: How to map SNPs of C. Albicans using custom data?
... Hi Bernatgel, I tried using the getVariantsColors function but the console kept returning the error message: Error in getVariantsColors(snps$Chr) : could not find function "getVariantsColors". It seems the function is not in the package? ...
written 6 weeks ago by nattzy9410
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Answer: A: How to map SNPs of C. Albicans using custom data?
... Hi, is there any way I can plot more than 2 data panels? I want to combine my rainfall plots with plots of gene regions. And also, is there a way to overlap data? e.g. if I wanted to plot gene regions and mRNA regions on the same data panel but with different colours. ...
written 7 weeks ago by nattzy9410
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Comment: C: How to map SNPs of C. Albicans using custom data?
... Managed to figure it out! Thanks :) ...
written 7 weeks ago by nattzy9410
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Answer: A: How to map SNPs of C. Albicans using custom data?
... Hi Bernatgel, Thanks for all the help so far. I was following your tutorial on how to plot P. Vivax genes and was attempting to do the same for C. Albicans. I followed the instructions but was unable to complete the final step of plotting the density. I am wondering if that is because of the way th ...
written 7 weeks ago by nattzy9410
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Comment: C: How to map SNPs of C. Albicans using custom data?
... ok. Thanks so much bernatgel! ...
written 8 weeks ago by nattzy9410
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Comment: C: How to map SNPs of C. Albicans using custom data?
... ok. Thanks so much bernatgel! ...
written 8 weeks ago by nattzy9410

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