User: Sharon
Sharon • 450
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Posts by Sharon
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... Hello, I used Beagle instead of Michigan Imputation Server and it works with me. ...
written 6 months ago by
Sharon • 450
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... Great, thank you :) ...
written 6 months ago by
Sharon • 450
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... Yes, I realised that also. Thanks Kevin :) ...
written 6 months ago by
Sharon • 450
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... I used Beagle it self and it works with me with no issues like the server. ...
written 11 months ago by
Sharon • 450
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... Still trying anamaria. I will post my answer here if it works out. ...
written 11 months ago by
Sharon • 450
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... Never used beagle. I will check this out and see. Thanks a lot ...
written 12 months ago by
Sharon • 450
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9 follow
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... Hi Every one
I am a bit stuck at this error from Michigan Imputation Server, does any one know what this error means and any hint to fix?
> Error: More than 100 obvious strand flips have been detected. Please
> check strand. Imputation cannot be started!
Statistics:
Alternativ ...
written 12 months ago by
Sharon • 450
• updated
12 months ago by
Shicheng Guo • 7.8k
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... Good catch. I should use Ghr37, I will check if this will remove the duplications. Thanks Kevin a lot. Always helpful. ...
written 12 months ago by
Sharon • 450
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... **Hi Everyone**
I am trying to use Michigan Impute Server. I use Checkvcf first to avoid failure in the server.
python checkVCF.py -r checkVCF/hs37d5.fa -o test chr3.vcf
**I got some duplicates and inconsistent ref.**
> checkVCF.py -- check validity of VCF file for meta-analysis v ...
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... Hi everyone
Do you know if the genes starting with Gm in **mouse** have a canonical name or not? I am stuck with those when I used gencode transcripts and gencode gtf for annotations too.
My understanding is they don't have a canonical name yet.
But some of them is mentioned to have overlap with ...
written 16 months ago by
Sharon • 450
• updated
16 months ago by
Emily_Ensembl ♦ 19k
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