User: Sharon

gravatar for Sharon
Sharon450
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450
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1 month ago
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2 years, 3 months ago
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Posts by Sharon

<prev • 217 results • page 1 of 22 • next >
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Comment: C: How to fix this strand flips for Michigan Imputation Server?
... Hello, I used Beagle instead of Michigan Imputation Server and it works with me. ...
written 6 months ago by Sharon450
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Comment: C: Relatedness vs relatedness2 from vcftools give different results
... Great, thank you :) ...
written 6 months ago by Sharon450
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Comment: C: Annovar for mouse buildver and downdb?
... Yes, I realised that also. Thanks Kevin :) ...
written 6 months ago by Sharon450
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Comment: C: How to fix this strand flips for Michigan Imputation Server?
... I used Beagle it self and it works with me with no issues like the server. ...
written 11 months ago by Sharon450
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Comment: C: How to fix this strand flips for Michigan Imputation Server?
... Still trying anamaria. I will post my answer here if it works out. ...
written 11 months ago by Sharon450
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Comment: C: How to fix this strand flips for Michigan Imputation Server?
... Never used beagle. I will check this out and see. Thanks a lot ...
written 12 months ago by Sharon450
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How to fix this strand flips for Michigan Imputation Server?
... Hi Every one I am a bit stuck at this error from Michigan Imputation Server, does any one know what this error means and any hint to fix? > Error: More than 100 obvious strand flips have been detected. Please > check strand. Imputation cannot be started! Statistics: Alternativ ...
imputation snp written 12 months ago by Sharon450 • updated 12 months ago by Shicheng Guo7.8k
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Comment: C: How to remove duplicate sites and inconsistent sites from a VCF?
... Good catch. I should use Ghr37, I will check if this will remove the duplications. Thanks Kevin a lot. Always helpful. ...
written 12 months ago by Sharon450
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How to remove duplicate sites and inconsistent sites from a VCF?
... **Hi Everyone** I am trying to use Michigan Impute Server. I use Checkvcf first to avoid failure in the server. python checkVCF.py -r checkVCF/hs37d5.fa -o test chr3.vcf **I got some duplicates and inconsistent ref.** > checkVCF.py -- check validity of VCF file for meta-analysis v ...
vcf michigan impute server plink written 12 months ago by Sharon450 • updated 10 months ago by Biostar ♦♦ 20
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Do genes starting with Gm have a canonical name yet?
... Hi everyone Do you know if the genes starting with Gm in **mouse** have a canonical name or not? I am stuck with those when I used gencode transcripts and gencode gtf for annotations too. My understanding is they don't have a canonical name yet. But some of them is mentioned to have overlap with ...
rna-seq written 16 months ago by Sharon450 • updated 16 months ago by Emily_Ensembl19k

Latest awards to Sharon

Popular Question 5 weeks ago, created a question with more than 1,000 views. For STAR reasonable parameters
Popular Question 3 months ago, created a question with more than 1,000 views. For STAR reasonable parameters
Popular Question 3 months ago, created a question with more than 1,000 views. For Exac and gnomad MAF value in VCF
Popular Question 3 months ago, created a question with more than 1,000 views. For Kinship Relatedness using plink
Popular Question 4 months ago, created a question with more than 1,000 views. For Kinship Relatedness using plink
Popular Question 4 months ago, created a question with more than 1,000 views. For edgeR Pvalue/FDR results
Student 5 months ago, asked a question with at least 3 up-votes. For Salmon unmapped reads
Popular Question 6 months ago, created a question with more than 1,000 views. For Alignment dropped with Salmon
Popular Question 6 months ago, created a question with more than 1,000 views. For Alignment dropped with Salmon
Popular Question 7 months ago, created a question with more than 1,000 views. For Alignment dropped with Salmon
Popular Question 7 months ago, created a question with more than 1,000 views. For From transcripts counts of Salmon to genes counts needed by edgeR
Popular Question 7 months ago, created a question with more than 1,000 views. For Alignment dropped with Salmon
Popular Question 8 months ago, created a question with more than 1,000 views. For edgeR Pvalue/FDR results
Popular Question 9 months ago, created a question with more than 1,000 views. For Exac and gnomad MAF value in VCF
Student 9 months ago, asked a question with at least 3 up-votes. For Salmon unmapped reads
Popular Question 11 months ago, created a question with more than 1,000 views. For Exac and gnomad MAF value in VCF
Popular Question 11 months ago, created a question with more than 1,000 views. For Exac and gnomad MAF value in VCF
Popular Question 13 months ago, created a question with more than 1,000 views. For Heatmap for differential gene expressions
Popular Question 14 months ago, created a question with more than 1,000 views. For Kinship Relatedness using plink
Popular Question 15 months ago, created a question with more than 1,000 views. For Kinship Relatedness using plink
Scholar 18 months ago, created an answer that has been accepted. For A: Alignment dropped with Salmon
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Coverage in whole genome sequencing
Voter 20 months ago, voted more than 100 times.
Scholar 23 months ago, created an answer that has been accepted. For A: Alignment dropped with Salmon
Centurion 23 months ago, created 100 posts.

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