User: Sharon
Sharon • 510
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Posts by Sharon
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... Thanks RamRS, done :) ...
written 7 months ago by
Sharon • 510
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... I am using linux, and vim. :) Thanks genomax ...
written 7 months ago by
Sharon • 510
1
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... Hi everyone
In case anyone else stuck at this like me, this works:
SNPs <- getBM(attributes=c('ensembl_gene_id', 'germ_line_variation_source'),filters = 'germ_line_variation_source',values='SGRP', mart = mygenome)
Thanks ...
written 7 months ago by
Sharon • 510
2
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... Hi Everyone
I am trying to get all genes that has gremlin variant from biomart using code:
SNPs <- getBM(attributes=c('ensembl_gene_id'), filters = 'germ_line_variation_source',values='with_validated_snp', mart = mygenome)
SNPs <- getBM(attributes=c('ensembl_gene_id'), filters = ...
written 8 months ago by
Sharon • 510
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Comment:
C: GT 2/3, or 3/3 or 2/2 in vcf
... Hi Tania
I think I understand your question. I think you assume that the reference is the first entry and this confuses you that you assume GT should be 0/1 or 1/1 or 1/2 or 1/3 etc like the first one is usually 0 or 1? Right? Because I was there too :)
These are indeces so in Devon answer 0 is ...
written 9 months ago by
Sharon • 510
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... Hello, I used Beagle instead of Michigan Imputation Server and it works with me. ...
written 21 months ago by
Sharon • 510
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... Great, thank you :) ...
written 22 months ago by
Sharon • 510
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... Yes, I realised that also. Thanks Kevin :) ...
written 22 months ago by
Sharon • 510
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... I used Beagle it self and it works with me with no issues like the server. ...
written 2.2 years ago by
Sharon • 510
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3.0k
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... Still trying anamaria. I will post my answer here if it works out. ...
written 2.2 years ago by
Sharon • 510
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