User: Sharon
Sharon • 390
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Posts by Sharon
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... I used Beagle it self and it works with me with no issues like the server. ...
written 4 weeks ago by
Sharon • 390
0
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290
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... Still trying anamaria. I will post my answer here if it works out. ...
written 7 weeks ago by
Sharon • 390
0
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290
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... Never used beagle. I will check this out and see. Thanks a lot ...
written 8 weeks ago by
Sharon • 390
6
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6 follow
1
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... Hi Every one
I am a bit stuck at this error from Michigan Imputation Server, does any one know what this error means and any hint to fix?
> Error: More than 100 obvious strand flips have been detected. Please
> check strand. Imputation cannot be started!
Statistics:
Alternativ ...
written 8 weeks ago by
Sharon • 390
• updated
8 weeks ago by
Shicheng Guo • 7.3k
1
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... Good catch. I should use Ghr37, I will check if this will remove the duplications. Thanks Kevin a lot. Always helpful. ...
written 9 weeks ago by
Sharon • 390
1
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... **Hi Everyone**
I am trying to use Michigan Impute Server. I use Checkvcf first to avoid failure in the server.
python checkVCF.py -r checkVCF/hs37d5.fa -o test chr3.vcf
**I got some duplicates and inconsistent ref.**
> checkVCF.py -- check validity of VCF file for meta-analysis v ...
2
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1
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417
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... Hi everyone
Do you know if the genes starting with Gm in **mouse** have a canonical name or not? I am stuck with those when I used gencode transcripts and gencode gtf for annotations too.
My understanding is they don't have a canonical name yet.
But some of them is mentioned to have overlap with ...
written 6 months ago by
Sharon • 390
• updated
6 months ago by
Emily_Ensembl ♦ 16k
0
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1
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215
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... Thanks WouterDeCoster :) ...
written 6 months ago by
Sharon • 390
4
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1
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215
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1
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... Hi Everyone
If we test the cummulative effect of a group of variants in a gene (or a region) using burden test and association analysis stuff.
If a gene is found very significant, should we validate all variants in the gene using sanger sequence? Doesn't seem reasonable, so what we can do to prove ...
written 6 months ago by
Sharon • 390
• updated
6 months ago by
WouterDeCoster ♦ 36k
1
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1
answer
579
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... work doesn't leave me =D I just switched to something else :) :) ...
written 7 months ago by
Sharon • 390
Latest awards to Sharon
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For Exac and gnomad MAF value in VCF
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For Exac and gnomad MAF value in VCF
Popular Question
3 months ago,
created a question with more than 1,000 views.
For Heatmap for differential gene expressions
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Kinship Relatedness using plink
Popular Question
5 months ago,
created a question with more than 1,000 views.
For Kinship Relatedness using plink
Scholar
8 months ago,
created an answer that has been accepted.
For A: Alignment dropped with Salmon
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: Coverage in whole genome sequencing
Voter
10 months ago,
voted more than 100 times.
Scholar
13 months ago,
created an answer that has been accepted.
For A: Alignment dropped with Salmon
Centurion
13 months ago,
created 100 posts.
Scholar
13 months ago,
created an answer that has been accepted.
For A: Alignment dropped with Salmon
Scholar
13 months ago,
created an answer that has been accepted.
For A: Alignment dropped with Salmon
Scholar
14 months ago,
created an answer that has been accepted.
For A: Alignment dropped with Salmon
Scholar
14 months ago,
created an answer that has been accepted.
For A: Alignment dropped with Salmon
Supporter
14 months ago,
voted at least 25 times.
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