User: Sharon

gravatar for Sharon
Sharon390
Reputation:
390
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1 month ago
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1 year, 6 months ago
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Posts by Sharon

<prev • 214 results • page 1 of 22 • next >
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Comment: C: How to fix this strand flips for Michigan Imputation Server?
... I used Beagle it self and it works with me with no issues like the server. ...
written 4 weeks ago by Sharon390
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Comment: C: How to fix this strand flips for Michigan Imputation Server?
... Still trying anamaria. I will post my answer here if it works out. ...
written 7 weeks ago by Sharon390
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Comment: C: How to fix this strand flips for Michigan Imputation Server?
... Never used beagle. I will check this out and see. Thanks a lot ...
written 8 weeks ago by Sharon390
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How to fix this strand flips for Michigan Imputation Server?
... Hi Every one I am a bit stuck at this error from Michigan Imputation Server, does any one know what this error means and any hint to fix? > Error: More than 100 obvious strand flips have been detected. Please > check strand. Imputation cannot be started! Statistics: Alternativ ...
imputation snp written 8 weeks ago by Sharon390 • updated 8 weeks ago by Shicheng Guo7.3k
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Comment: C: How to remove duplicate sites and inconsistent sites from a VCF?
... Good catch. I should use Ghr37, I will check if this will remove the duplications. Thanks Kevin a lot. Always helpful. ...
written 9 weeks ago by Sharon390
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How to remove duplicate sites and inconsistent sites from a VCF?
... **Hi Everyone** I am trying to use Michigan Impute Server. I use Checkvcf first to avoid failure in the server. python checkVCF.py -r checkVCF/hs37d5.fa -o test chr3.vcf **I got some duplicates and inconsistent ref.** > checkVCF.py -- check validity of VCF file for meta-analysis v ...
vcf michigan impute server plink written 9 weeks ago by Sharon390 • updated 5 days ago by Biostar ♦♦ 20
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Do genes starting with Gm have a canonical name yet?
... Hi everyone Do you know if the genes starting with Gm in **mouse** have a canonical name or not? I am stuck with those when I used gencode transcripts and gencode gtf for annotations too. My understanding is they don't have a canonical name yet. But some of them is mentioned to have overlap with ...
rna-seq written 6 months ago by Sharon390 • updated 6 months ago by Emily_Ensembl16k
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Comment: C: Validate interesting gene from a burden test and association studies (SkatO, etc
... Thanks WouterDeCoster :) ...
written 6 months ago by Sharon390
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Validate interesting gene from a burden test and association studies (SkatO, etc)
... Hi Everyone If we test the cummulative effect of a group of variants in a gene (or a region) using burden test and association analysis stuff. If a gene is found very significant, should we validate all variants in the gene using sanger sequence? Doesn't seem reasonable, so what we can do to prove ...
skat association burden snp validation written 6 months ago by Sharon390 • updated 6 months ago by WouterDeCoster36k
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Comment: C: How tximport work with gencode transcripts?
... work doesn't leave me =D I just switched to something else :) :) ...
written 7 months ago by Sharon390

Latest awards to Sharon

Popular Question 7 weeks ago, created a question with more than 1,000 views. For Exac and gnomad MAF value in VCF
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Exac and gnomad MAF value in VCF
Popular Question 3 months ago, created a question with more than 1,000 views. For Heatmap for differential gene expressions
Popular Question 4 months ago, created a question with more than 1,000 views. For Kinship Relatedness using plink
Popular Question 5 months ago, created a question with more than 1,000 views. For Kinship Relatedness using plink
Scholar 8 months ago, created an answer that has been accepted. For A: Alignment dropped with Salmon
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Coverage in whole genome sequencing
Voter 10 months ago, voted more than 100 times.
Scholar 13 months ago, created an answer that has been accepted. For A: Alignment dropped with Salmon
Centurion 13 months ago, created 100 posts.
Scholar 13 months ago, created an answer that has been accepted. For A: Alignment dropped with Salmon
Scholar 13 months ago, created an answer that has been accepted. For A: Alignment dropped with Salmon
Scholar 14 months ago, created an answer that has been accepted. For A: Alignment dropped with Salmon
Scholar 14 months ago, created an answer that has been accepted. For A: Alignment dropped with Salmon
Supporter 14 months ago, voted at least 25 times.

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