User: Sharon
Sharon • 490
- Reputation:
- 490
- Status:
- Trusted
- Location:
- Last seen:
- 1 month, 3 weeks ago
- Joined:
- 3 years, 3 months ago
- Email:
- s***********@gmail.com
Posts by Sharon
<prev
• 222 results •
page 1 of 23 •
next >
0
votes
1
answer
125
views
1
answers
... Thanks RamRS, done :) ...
written 3 months ago by
Sharon • 490
0
votes
1
answer
125
views
1
answers
... I am using linux, and vim. :) Thanks genomax ...
written 3 months ago by
Sharon • 490
1
vote
1
answer
125
views
1
answers
... Hi everyone
In case anyone else stuck at this like me, this works:
SNPs <- getBM(attributes=c('ensembl_gene_id', 'germ_line_variation_source'),filters = 'germ_line_variation_source',values='SGRP', mart = mygenome)
Thanks ...
written 3 months ago by
Sharon • 490
2
votes
1
answer
125
views
1
answer
... Hi Everyone
I am trying to get all genes that has gremlin variant from biomart using code:
SNPs <- getBM(attributes=c('ensembl_gene_id'), filters = 'germ_line_variation_source',values='with_validated_snp', mart = mygenome)
SNPs <- getBM(attributes=c('ensembl_gene_id'), filters = ...
written 3 months ago by
Sharon • 490
1
vote
2
answers
304
views
2
answers
Comment:
C: GT 2/3, or 3/3 or 2/2 in vcf
... Hi Tania
I think I understand your question. I think you assume that the reference is the first entry and this confuses you that you assume GT should be 0/1 or 1/1 or 1/2 or 1/3 etc like the first one is usually 0 or 1? Right? Because I was there too :)
These are indeces so in Devon answer 0 is ...
written 5 months ago by
Sharon • 490
0
votes
1
answer
2.5k
views
1
answers
... Hello, I used Beagle instead of Michigan Imputation Server and it works with me. ...
written 17 months ago by
Sharon • 490
0
votes
1
answer
3.5k
views
1
answers
... Great, thank you :) ...
written 18 months ago by
Sharon • 490
0
votes
0
answers
1.5k
views
0
answers
... Yes, I realised that also. Thanks Kevin :) ...
written 18 months ago by
Sharon • 490
0
votes
1
answer
2.5k
views
1
answers
... I used Beagle it self and it works with me with no issues like the server. ...
written 22 months ago by
Sharon • 490
0
votes
1
answer
2.5k
views
1
answers
... Still trying anamaria. I will post my answer here if it works out. ...
written 23 months ago by
Sharon • 490
Latest awards to Sharon
Popular Question
3 months ago,
created a question with more than 1,000 views.
For edgeR error related to tximport
Popular Question
5 months ago,
created a question with more than 1,000 views.
For edgeR error related to tximport
Popular Question
5 months ago,
created a question with more than 1,000 views.
For edgeR error related to tximport
Popular Question
10 months ago,
created a question with more than 1,000 views.
For How can I convert from bed to bed12 format?
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Alignment dropped with Salmon
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Relatedness vs relatedness2 from vcftools give different results
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Is this variant probably an artifact?
Popular Question
10 months ago,
created a question with more than 1,000 views.
For edgeR error related to tximport
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Insert size different from company with BBMap
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Runs of homozygosity
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Ambiguous reads unmapped disappear with FMD Salmon?
Popular Question
10 months ago,
created a question with more than 1,000 views.
For From transcripts counts of Salmon to genes counts needed by edgeR
Popular Question
10 months ago,
created a question with more than 1,000 views.
For Transcripts ID matching in tximport for edgeR
Popular Question
10 months ago,
created a question with more than 1,000 views.
For How tximport work with gencode transcripts?
Popular Question
10 months ago,
created a question with more than 1,000 views.
For edgeR error related to tximport
Popular Question
11 months ago,
created a question with more than 1,000 views.
For edgeR error related to tximport
Popular Question
12 months ago,
created a question with more than 1,000 views.
For Relatedness vs relatedness2 from vcftools give different results
Popular Question
12 months ago,
created a question with more than 1,000 views.
For How can I convert from bed to bed12 format?
Popular Question
12 months ago,
created a question with more than 1,000 views.
For edgeR error related to tximport
Popular Question
12 months ago,
created a question with more than 1,000 views.
For Runs of homozygosity
Popular Question
12 months ago,
created a question with more than 1,000 views.
For STAR reasonable parameters
Popular Question
14 months ago,
created a question with more than 1,000 views.
For Exac and gnomad MAF value in VCF
Popular Question
14 months ago,
created a question with more than 1,000 views.
For STAR reasonable parameters
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Kinship Relatedness using plink
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1545 users visited in the last hour