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Posts by ysh
Answer: A: GISTIC segment overlap error
... I think the reason is the cnv segment in line 26227 is included in segment in line 26377, they came from same sample , same chromosome, but the chromosome start and end is overlaped. you should consider to resolve this overlap. and it seems like you have 169 overlaps detected in your segmentation fi ...
... maybe find the sequence information from the annotation file? I mean the flanking region sequence around SNP site. ...
... found same error when using DNAcopy package recently, found out just some column is empty in input data.(table header is fine, but row below is not complete. ...
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