User: victor.2wy

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victor.2wy0
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Posts by victor.2wy

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Comment: C: Survival analysis with gene expression
... Hi Kevin, thanks for creating this package. I'm learning survival analysis, and am finding your tutorial is very helpful. I was wondering regarding your suggestion to arrange the tests by log rank p value. From my understanding, the log rank test is computed comparing survival time between groups. ...
written 23 days ago by victor.2wy0
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Comment: C: minfi pre-processing and normalization
... For bead count information you need to load in your idats as an **extended** rgset and then either use getNBeads() to get a matrix of bead counts, or wateRmelon::beadcount(). I would recommend the latter because getNBeads() returns bead count on a per-probe basis instead of a per-cpg site basis (use ...
written 24 months ago by victor.2wy0
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Normalization for combined data from multiple sources: ssNoob + BMIQ/quantile?
... Hi all, Just wondering if anyone has any suggestions on how to normalize a dataset consisting of multiple sources of samples. The samples are all from the same tissue type, and ran on the 450k array. I have raw idats for 3 datasets, and only meth/unmeth intensities for the 4th dataset. Specifical ...
450k dna methylation epic normalization R written 24 months ago by victor.2wy0

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