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Posts by victor.2wy
... For bead count information you need to load in your idats as an **extended** rgset and then either use getNBeads() to get a matrix of bead counts, or wateRmelon::beadcount(). I would recommend the latter because getNBeads() returns bead count on a per-probe basis instead of a per-cpg site basis (use ...
... Hi all, Just wondering if anyone has any suggestions on how to normalize a dataset consisting of multiple sources of samples. The samples are all from the same tissue type, and ran on the 450k array. I have raw idats for 3 datasets, and only meth/unmeth intensities for the 4th dataset. Specifical ...
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