User: milanlove

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milanlove0
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Posts by milanlove

<prev • 7 results • page 1 of 1 • next >
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bgzf_blocked error when using samtools
... when i used samtools sort for sorting .bam file, following error was appeared. any body know that how i can solve it? [E::bgzf_read] Read block operation failed with error -1 after 0 of 4 bytes samtools sort: truncated file. Aborting ...
software error bgzf samtools written 3 days ago by milanlove0
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retrieving active LINE1 elements
... HI How to get active LINE1 elements for a newly assembled mammalia genome? can i use "L1Base (v2)" database: is a dedicated database containing putatively active LINE-1 (L1) insertions residing in human and rodent genomes?? or there are another workflow to perform it? ...
repetitive line1 written 4 months ago by milanlove0
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Comment: C: interpretation Abyss stats
... your answer is complete, thanks a lot ...
written 4 months ago by milanlove0
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interpretation Abyss stats
... i used Abyss to assemble some reads and after assembly, it give me stats like this: n:114915 min:500 n50:739 sum:2471869 it say me that minimum contig size is 500 while in output fasta file i see contigs less than 500. it confused me. also when i use grep command (grep -v ">" input.fasta | w ...
assembly next-gen abyss written 4 months ago by milanlove0 • updated 4 months ago by benv620
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Comment: A: adjusting p-value for GO analysis
... DAVID tool gave a column named "bonferroni", is it corrected p-value? ...
written 4 months ago by milanlove0
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Comment: C: adjusting p-value for GO analysis
... i read it before you suggest it to me. my goal is select best way to it and also i want to know about n argument ...
written 4 months ago by milanlove0
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adjusting p-value for GO analysis
... how can i adjust p-values of GO analysis using bonferroni correction? it confused me for several days. it is possible using p.adjust function in R? i d'not know how to set n argument in this function ...
gene go written 4 months ago by milanlove0 • updated 4 months ago by moushengxu270

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