User: ram.mainali

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Posts by ram.mainali

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Calculation of signal-to-noise ratio (SNR)
... How can I calculate signal-to-noise ratio for example in graph showing k-mers peaks against chromosome bin. Is there good paper describing methods regarding calculation of signal-to-noise ratio (SNR) in the field of bio-bioinformatics or genomics. Thank you ...
genome next-gen snr sequencing written 11 days ago by ram.mainali0 • updated 6 days ago by Kevin Blighe1.3k
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K-mer size and de-novo assembly and SNP mining
... I have Illumina whole genome paired end short sequence reads of length 150 bp. I want to design k-mer, apply de-novo assembly and identify the SNPs markers. My questions are 1. What sizes of k-mer I should design. Do I need to design k-mer from both sides. 2. Which software do you think better f ...
genome next-gen de-novo assembly sequence snp written 8 weeks ago by ram.mainali0 • updated 8 weeks ago by WouterDeCoster21k

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