User: stephanie.devos

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Posts by stephanie.devos

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Comment: C: kallisto + sleuth: no results
... Hi, no, any idea what it means (why do I get this error with the newer version of Sleuth and not with the old one??) or how I could fix it? As I said, R skills low at the moment, although I try to catch up. Thank you for any suggestion! ...
written 9 weeks ago by stephanie.devos0
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Comment: C: kallisto + sleuth: no results
... so what do you think? ...
written 3 months ago by stephanie.devos0
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Comment: C: kallisto + sleuth: no results
... so what do you think? ...
written 3 months ago by stephanie.devos0
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Comment: A: kallisto + sleuth: no results
... Sure, here it is: suppressMessages({ library("sleuth") }) sample_id <- dir(file.path("..", "results_sleuthexample")) sample_id kal_dirs <- file.path("..", "results_sleuthexample", sample_id, "kallisto") kal_dirs s2c <- read.table(file.path("..", "metadat ...
written 3 months ago by stephanie.devos0
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kallisto + sleuth: no results
... Hi, I am performing several differential expression experiments with 1-factor, 2-conditions and 3 replicates per condition. I am currently getting a "....killed" message from R every time I run sleuth version sleuth/0.28.0-intel-2015b-R-3.2.1, right around the step so = sleuth_prep(s2c, ~condition) ...
R sleuth kallisto rna-seq written 3 months ago by stephanie.devos0 • updated 9 weeks ago by philgev20

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