User: Rose

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Posts by Rose

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Biological significance of Fold_enrichment in macs2
... Can anyone explain me about the biological significance of fold_enrichment in macs2. ...
macs2 written 9 hours ago by Rose0
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How is the fold_enrichment in macs2 calculated?
... Hi , This question has been explained in many posts, but am not able to understand it correctly. That's why I came up here. Can anyone please tell me how the fold_enrichment in macs2 calculated. Please explain with an example data set. Also, after the differential binding step using edgeR, again I ...
macs2 written 4 days ago by Rose0
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Comment: C: How to get Kegg pathway names from kegg pathway IDs
... So sorry for the late reply.. I was able to get the results by this way. Thanks a lot. ...
written 4 weeks ago by Rose0
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Comment: C: How to get Kegg pathway names from kegg pathway IDs
... This is the example data. GENE_NAME KEGG_ID 1. Klf6 NULL 2. Fer 04145, 04514, 04650, 04670, 04810, 05140, 05144, 05146, 05150, 05323, 05416 3.Itgb2l 04622 Expected Output : GENE_NAME KEGG_ID PathwayName 1. Klf6 NULL 2.Fer 04520 ...
written 4 weeks ago by Rose0
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Comment: C: How to get Kegg pathway names from kegg pathway IDs
... Hi, Thanks for the code, It works fine, but In my file, In the second column, I have 11 IDs for a gene 'Fer'. So, I should get the pathway names of them separated by commas in a column. To be more specific, All pathway names of that gene should be in one column. Similarly, for all other genes. ...
written 4 weeks ago by Rose0
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How to get Kegg pathway names from kegg pathway IDs
... Hello, I 'm trying to find the pathway names corresponding to pathway IDs of mus musculus in R. My input file is in the form below. Kegg_ID 1. 4520 2. 04145, 04514, 04650, 04670, 04810, 05140, 05144, 05146, 05150, 05323, 05416 3. 4622 4. 00561, 00564, 01100, 04070 I found some working codes ...
kegg pathway names written 5 weeks ago by Rose0 • updated 5 weeks ago by EagleEye4.8k
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Answer: A: what do the headers of the rMATS output files mean?
... The explanation was really helpful. But, I have another doubt. rMats was run on two samples with triplicates, and I got the outputs. In that, one of the output file, **SE.MATS.JunctionCountOnly.txt** , some of the values in IJC_SAMPLE_1 , SJC_SAMPLE_1, IJC_SAMPLE_2 and SJC_SAMPLE_2 were in the for ...
written 9 weeks ago by Rose0
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Comment: C: Output error messages to a file using perl
... Sorry for posting in the wrong place. ...
written 11 weeks ago by Rose0
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(Closed) Output error messages to a file using perl
... How can I write a perl program (conversion of DNA to RNA sequence) to print all the error messages(including system errors) to a file using packages? ...
perl packages written 11 weeks ago by Rose0 • updated 11 weeks ago by Pierre Lindenbaum102k

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