User: hlfzeus

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hlfzeus110
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Posts by hlfzeus

<prev • 30 results • page 1 of 3 • next >
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Comment: C: make fasta sequence which is multiple of three
... Hello, if you can program in Java, you may use the SEDA API (https://github.com/sing-group/seda) in order to create this operation that you need. You can even use the new Java 9 shell to easily do this as I show in this post: https://twitter.com/hlfernandez/status/955762493099569153 Regards. ...
written 4 days ago by hlfzeus110
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Comment: C: How to concatenate two fasta files, using regular expressions
... Right, sequence headers are automatically parsed to distinguish sequence identifiers (first set of characters until the first blank space) from the additional information. Then, this headers can be used in different functions with different purposes. ...
written 4 days ago by hlfzeus110
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Comment: C: How to concatenate two fasta files, using regular expressions
... Right, it was a typo in the manual. We have just fixed it. Thank you. ...
written 4 days ago by hlfzeus110
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Comment: C: How to concatenate two fasta files, using regular expressions
... Sure, we will create a post as soon as we finish the implementation of some new features. Thank you! ...
written 4 days ago by hlfzeus110
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Comment: C: How to concatenate two fasta files, using regular expressions
... Yes, SEDA works for multi-FASTA files. ...
written 4 days ago by hlfzeus110
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Answer: A: How to concatenate two fasta files, using regular expressions
... Dear coleague, you can easily do this concatenation by using the *"Concatenate sequences"* option of **SEDA** http://www.sing-group.org/ . See section *"3.17 Concatenate sequences"* of the user manual available here: http://www.sing-group.org/seda/downloads/manuals/seda-user-manual-0.1.pdf You sim ...
written 4 days ago by hlfzeus110 • updated 4 days ago by Istvan Albert ♦♦ 76k
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Answer: A: Read a fasta file | Java
... You may have a look at SEDA (http://www.sing-group.org/seda/), which also provides a Java API for easily manipulation of FASTA sequences (https://github.com/sing-group/seda). ...
written 6 days ago by hlfzeus110
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Answer: A: changing header name in fasta file
... Dear colleague, I will recommend you to try **SEDA** (http://www.sing-group.org/seda/). The ***"Rename header"*** option (explained in section 3.8 of the user manual: http://www.sing-group.org/seda/downloads/manuals/seda-user-manual-0.1.0.pdf) allows you to do exactly what you need. With best reg ...
written 5 weeks ago by hlfzeus110
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Answer: A: Rmoving - from sequence data fasta file
... Hi James, you can use the "Undo alignment" function of SEDA (http://www.sing-group.org/seda/). Regards. ...
written 6 weeks ago by hlfzeus110
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Comment: C: fasta header rearrangement
... You may have a look at SEDA (http://www.sing-group.org/seda/), which as an option to rearrange or "reformat" sequence headers. See section 3.8 of the manual (http://www.sing-group.org/seda/downloads/manuals/seda-user-manual-1.0.0.pdf) for more information. Regards. ...
written 6 weeks ago by hlfzeus110

Latest awards to hlfzeus

Scholar 3 days ago, created an answer that has been accepted. For A: Renaming FASTA headers while keeping some previous information?
Scholar 10 weeks ago, created an answer that has been accepted. For C: Ballgown data reading problem
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Renaming FASTA headers while keeping some previous information?
Scholar 12 weeks ago, created an answer that has been accepted. For C: Ballgown data reading problem

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