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How to get a partition file for phylogenetic trees?
phylogenetic python analysis partition
13 months ago by YOUSEUFS ▴ 30
0
votes
0
replies
292
views
How to get Pfam domain ID's for a proteome?
pfam acid protein amino interpro domains
15 months ago by YOUSEUFS ▴ 30
2
votes
4
replies
591
views
Collapse multifasta file by specific chromosome names
fasta
17 months ago by YOUSEUFS ▴ 30
1
vote
2
replies
548
views
Can you do a sequence alignment with an uneven number of genes? (For phylogenetics)
alignment phylogenetics sequence
updated 17 months ago by 141k • written 17 months ago by ▴ 30
0
votes
1
reply
410
views
How to retrieve all genes of interest from GenBank?
ncbi genbank phylogenetics mitochondria
updated 17 months ago by 100k • written 17 months ago by ▴ 30
2
votes
4
replies
589
views
How to extract and concatenate fasta lines that match substring?
fasta python
updated 18 months ago by 13k • written 18 months ago by ▴ 30
2
votes
8
replies
919
views
How to batch download multiple mitochondrial FASTA & GFF files?
ncbi genomics mitochondria genomes entrez
19 months ago by YOUSEUFS ▴ 30
1
vote
1
reply
495
views
Where are the associated annotation (GFF) files for mitochondrial genomes on NCBI?
phylogenomics mitochondrial genomics NCBI
19 months ago by YOUSEUFS ▴ 30
1
vote
1
reply
513
views
Extract reads from specific taxa in blob tools?
genomics metagenomics blobtools
updated 10 months ago by 43k • written 21 months ago by ▴ 30
1
vote
0
replies
914
views
topGO enrichment: Should the "Gene universe" also contain genes with no GO term?
enrichment RNA-Seq go topGO
3.4 years ago by YOUSEUFS ▴ 30
1
vote
3
replies
2.2k
views
GFF file multiple features for 1 gene region, how to collapse into 1?
RNA-Seq GFF BEDTOOLS
updated 5.5 years ago by ★ 3.2k • written 5.5 years ago by ▴ 30
8
votes
4
replies
4.7k
views
Mapping contigs & scaffolds to ref genome?
mapping Assembly bowtie2
updated 5.8 years ago by 35k • written 6.5 years ago by ▴ 30
0
votes
3
replies
2.2k
views
Aligning Draft to Reference genomes, rearranging contigs?
mummer Assembly alignment
6.5 years ago by YOUSEUFS ▴ 30
0
votes
3
replies
1.5k
views
.nt assemblage file, can I convert to FASTA?
fasta file usage mapping bowtie
6.6 years ago by YOUSEUFS ▴ 30
0
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1
reply
1.3k
views
htseq-count results in missing genes
htseq-count RNA-Seq
6.7 years ago by YOUSEUFS ▴ 30
6
votes
5
replies
2.4k
views
Visualising indexed and sorted bam files
rna-seq
updated 6.7 years ago by ★ 2.9k • written 6.7 years ago by ▴ 30
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