User: nvucic

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nvucic30
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30
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New User
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Last seen:
3 months, 3 weeks ago
Joined:
6 months, 2 weeks ago
Email:
n*****@bio.bg.ac.rs

Posts by nvucic

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Visualization for ChIP-seq analysis
... Thanks Rory, I am using DiffBind for differential ChIP-seq analysis. I usually have two samples with 2-3 replicates, but I have troubles performing analysis on samples without replicates. Therefore, I create replicates by calling peaks with different peak callers (MACS2 and SPP) and perform differen ...
written 5 months ago by nvucic30
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Comment: C: Visualization for ChIP-seq analysis
... Thank you Jared, I am more interested in Command Line tools but EaSeq really caught my attention and I'll definitely give it a try. ...
written 5 months ago by nvucic30
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Comment: C: Visualization for ChIP-seq analysis
... Looks really good, especially chromosome ideogram feature. Thanks. ...
written 5 months ago by nvucic30
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Comment: C: Visualization for ChIP-seq analysis
... Wow, thanks Kevin this is awesome. ...
written 5 months ago by nvucic30
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Visualization for ChIP-seq analysis
... Hello guys, from your experience with chip-seq analysis what would be the most useful visual representations of chip-seq results? I am particularly interested in your opinion on visualizations of motif discovery, annotation and differential binding analysis and your experiences with various bioinfo ...
differential analysis motif detection chip-seq written 5 months ago by nvucic30 • updated 4 months ago by simon.vanheeringen110
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Differential ChIP-seq analysis
... Hello everyone, I am interested in differential ChIP-seq analysis. Does anyone know some real validated datasets that are publicly for this kind of analysis? Best regards, Nemanja ...
chip-seq written 5 months ago by nvucic30 • updated 5 months ago by jared.andrews07640
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NCI-60 RNA-seq data
... Hello, Can someone tell me is it possible and if it is, how to obtain raw RNA-seq data for NCI-60 cell lines from this project: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA282446? Thank you ...
next-gen raw data rna-seq written 6 months ago by nvucic30 • updated 6 months ago by colindaven510

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