User: zhang248

gravatar for zhang248
zhang24820
Reputation:
20
Status:
New User
Location:
HZAU, China
Last seen:
1 day, 18 hours ago
Joined:
4 months ago
Email:
z***********@webmail.hzau.edu.cn

Posts by zhang248

<prev • 13 results • page 1 of 2 • next >
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Comment: C: plot phylogenetic tree with Figtree
... Thanks, I'll try these tools. ...
written 14 days ago by zhang24820
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Comment: C: plot phylogenetic tree with Figtree
... Thanks, Kevin. But it's diffcult to manipulate the tree for me. ...
written 15 days ago by zhang24820
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Comment: C: plot phylogenetic tree with Figtree
... Thanks, I'll see them. ...
written 15 days ago by zhang24820
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Comment: C: plot phylogenetic tree with Figtree
... Thanks for your reply. I just want to draw the circle outside of the tree. ...
written 15 days ago by zhang24820
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Comment: C: plot phylogenetic tree with Figtree
... I'm soory, my network was broken last night. And I have upload the image. ...
written 15 days ago by zhang24820
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plot phylogenetic tree with Figtree
... I'm using figtree to plot a phylogenetic tree, can anyone tell me how to plot the out circle or a manual for Figtree? The circle with green,blue and yellow colours. ![enter image description here][1] [1]: https://image.ibb.co/nQrDXw/qq.jpg ...
phylogenetic tree figtree written 15 days ago by zhang24820
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Comment: C: CNVnator output filter
... Sorry to reply you so late. My output is ok, I just mixed the "normalized_RD" and "e-val1". ...
written 7 weeks ago by zhang24820
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Comment: C: Merge CNVnator output of multiple samples
... Thank you very much, especially for you are the first person who answer my question among my all questions! I'll try it. ...
written 3 months ago by zhang24820
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Comment: C: Merge CNVnator output of multiple samples
... Sorry for replying to you so late. I just try delly2 and it seems to be very slow with command "delly call -t DEL -g $GENOME -o s1.bcf $BAM1 $BAM2 ......". So, I think I just can use "delly call -t DEL -g $GENOME -o s1.bcf $BAM1" separately and then merge them with "delly merge". Am I right? ...
written 3 months ago by zhang24820
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CNVnator output filter
... Hi, I'm using CNVnator to call CNVs. I have 30 samples, and the "duplication" of all the outputs has no one with e-val1<0.05. This is my pipeline 1. cnvnator -root temp/${sample}.root -unique -tree $bam 2. cnvnator -root temp/${sample}.root -his $bin -d $dir 3. cnvnator -root temp/${sample}.r ...
filter cnv written 3 months ago by zhang24820 • updated 12 weeks ago by ChrisJ0

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