User: zhang248

gravatar for zhang248
zhang24820
Reputation:
20
Status:
New User
Location:
HZAU, China
Last seen:
2 weeks, 5 days ago
Joined:
2 months ago
Email:
z***********@webmail.hzau.edu.cn

Posts by zhang248

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Merge CNVnator output of multiple samples
... Thank you very much, especially for you are the first person who answer my question among my all questions! I'll try it. ...
written 6 weeks ago by zhang24820
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Comment: C: Merge CNVnator output of multiple samples
... Sorry for replying to you so late. I just try delly2 and it seems to be very slow with command "delly call -t DEL -g $GENOME -o s1.bcf $BAM1 $BAM2 ......". So, I think I just can use "delly call -t DEL -g $GENOME -o s1.bcf $BAM1" separately and then merge them with "delly merge". Am I right? ...
written 6 weeks ago by zhang24820
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CNVnator output filter
... Hi, I'm using CNVnator to call CNVs. I have 30 samples, and the "duplication" of all the outputs has no one with e-val1<0.05. This is my pipeline 1. cnvnator -root temp/${sample}.root -unique -tree $bam 2. cnvnator -root temp/${sample}.root -his $bin -d $dir 3. cnvnator -root temp/${sample}.r ...
filter cnv written 6 weeks ago by zhang24820 • updated 29 days ago by ChrisJ0
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CNVnator for multiple samples
... Hi, I want to use CNVnator to call CNV for multiple. Should I use the "-merge" parameter or not. If I can use "-merge", which step should I use. And if I should just call CNV for multiple samples separately, how can I merge the multiple outputs or if you can recommend me some tools? Thanks! ...
cnvnator cnv written 6 weeks ago by zhang24820
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Merge CNVnator output of multiple samples
... I am using CNVnator for multiple samples. I get a output of each individual, now I want to merge them, if anyone knows how to do or what tool can make this. ...
wgs tool cnv written 8 weeks ago by zhang24820
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Use ANNOVAR to annotate SNPs
... I am using ANNOVAR to annotate WGS SNPs with default parameters, and I get two output files, variant_function and exonic_variant_function. The variant_function file contain "downstream,exonic,intergenic,intronic,ncRNA_exonic,splicing,upstream,UTR3,UTR5" and I know the exonic_variant_function file ha ...
genome snp written 8 weeks ago by zhang24820

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