User: bg1116

gravatar for bg1116
bg11160
Reputation:
0
Status:
New User
Last seen:
2 months, 1 week ago
Joined:
1 year, 11 months ago
Email:
b*************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by bg1116

<prev • 6 results • page 1 of 1 • next >
0
votes
0
answers
118
views
0
answers
SNPTEST Error: Even Number of Values
... ./snptest -data ${datadir}/chr1.dose.vcf.gz \ -summary_stats_only \ -genotype_field DS \ -o ${outputdir}/chr${chr}.assoc.txt And getting this error: ERROR: -data must be supplied an even number of values. Any help with this error would be greatly appreciated. ...
data snptest written 4 months ago by bg11160
0
votes
0
answers
270
views
0
answers
Plink Genotype Means for --Linear and --Logistic Plink options
... I am trying to get genotype means in plink. --qt-means works with --assoc. Is there a way to get genotype means when running --logistic or --linear? ...
plink written 8 months ago by bg11160
0
votes
0
answers
301
views
0
answers
Comment: C: Taking Imputation Results from Build37 to Build38 Using a NEW Chain File
... I have concerns about the older chain files, not the current. We ran liftover command line tool using the older chain files, took the snps that were not lifted over in this process, and ran them through ncbi's online remap tool. Using NCBI's remap tool, most of these snps did get lifted over, pushin ...
written 11 months ago by bg11160
0
votes
0
answers
301
views
0
answers
Taking Imputation Results from Build37 to Build38 Using a NEW Chain File
... Going through the process of trying to take imputation results from Build 37 to Build 38 (lifting up). I am aware of several tools out there that do this, like UCSC, NCBI, Crossmap, LiftoverPlink, etc., but I am having trouble getting an up-to-date chain file. We tried to use NCBI’s remap tool but t ...
imputation liftover written 11 months ago by bg11160
1
vote
1
answer
537
views
1
answer
Info Score > 1 Plink?
... What does an info score > 1 mean? I thought all scores should be between 0 and 1. Info score comes from assoc.dosage file in plink. ...
gwas plink score written 11 months ago by bg11160 • updated 11 months ago by chrchang5235.4k
0
votes
3
answers
1.8k
views
3
answers
Answer: A: fcGENE conversion error: Plink dosage to bed/bim/fam
... Has anyone figured out the answer to this problem? I am having the same issue. Thanks ...
written 12 months ago by bg11160

Latest awards to bg1116

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2102 users visited in the last hour