User: sinumolgeorge

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Posts by sinumolgeorge

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STAPHYLOCOCCAL CASSETTE CHROMOSOME GENE MecA variation in each scc mec type?
... SCC MEC elements are 11 known to date. All 11 types contain MecA gene and orfX gene. But I confused about whether these gene sequences are varying in each type or remain same? ...
gene sequence alignment rna-seq blast written 24 days ago by sinumolgeorge0 • updated 23 days ago by Kevin Blighe6.5k
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Comment: C: Get pathway information from KEGG using Entry id
... I have used GENE NAME instead of pathway information for getting corresponding gene name. But it's not fetching output. Is there any other keyword for fetching corresponding gene name of KEGG id? ...
written 5 weeks ago by sinumolgeorge0
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Comment: C: Get pathway information from KEGG using Entry id
... Thank you very much ...
written 6 weeks ago by sinumolgeorge0
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Comment: C: Get pathway information from KEGG using Entry id
... Error in UseMethod("extract_") : no applicable method for 'extract_' applied to an object of class "list" ...
written 6 weeks ago by sinumolgeorge0
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Comment: C: Get pathway information from KEGG using Entry id
... I want to get the kegg_id along with the result. Are there any options? ...
written 6 weeks ago by sinumolgeorge0
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Comment: C: Get pathway information from KEGG using Entry id
... Thank you, but its giving pathway id, how we know the corresponding kegg id ? ...
written 6 weeks ago by sinumolgeorge0
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Get pathway information from KEGG using Entry id
... Hi, I have a list of ids from KEGG, is there any way to get the corresponding pathway information in a single search? Kegg_ids are - stm:STM2395, sau:SA0132, efa:EF2297 Expected output stm:STM2395 : Pathway : Cationic antimicrobial peptide (CAMP) resistance Thanks in advance ...
gene R next-gen snp sequencing written 6 weeks ago by sinumolgeorge0 • updated 6 weeks ago by EagleEye4.8k
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Download Metacyc data
... I wanted to do Blastp standalone by using database from Metacyc prokaryotic whole protein sequence data. How to download this data?can anyone help ...
genome alignment sequence chip-seq rna-seq written 8 weeks ago by sinumolgeorge0 • updated 5 weeks ago by Biostar ♦♦ 20
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Comment: C: To retrieve bacterial Phylum and Class information from a set of tax id
... It contains several files with .dmp extension. Can i join all these ...
written 9 weeks ago by sinumolgeorge0
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Comment: C: To retrieve bacterial Phylum and Class information from a set of tax id
... ERROR: No -pattern in command-line arguments ...
written 9 weeks ago by sinumolgeorge0

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