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10
votes
5
replies
7.5k
views
6 follow
How to use GRCh38 as reference for Annotating the variants using Annovar?
Annovar VCF next-gen
updated 6 months ago by 43k • written 6.6 years ago by ▴ 310
1
vote
3
replies
609
views
How to make the data compatible for DESeq2?
StringTie counts DESeq2
updated 5 months ago by 43k • written 20 months ago by ▴ 310
15
votes
15
replies
3.4k
views
6 follow
RNA-Seq or Exome Seq for Clinical data analysis
RNA-Seq Exome next-gen-sequencing
updated 20 months ago by 43k • written 6.7 years ago by ▴ 310
7
votes
12
replies
1.6k
views
How to pass arguments in a bash script to perform read alignment to the reference?
exome bwa bash
updated 5 months ago by 43k • written 4.2 years ago by ▴ 310
0
votes
0
replies
712
views
What is the possibility of replicates being different from other replicates of same sample?
microarray replicates mean-error
updated 5 months ago by 43k • written 4.2 years ago by ▴ 310
0
votes
0
replies
985
views
How to perform normalization and calculate when there are multiple groups ?
RNA-Seq ANOVA Normalization
4.2 years ago by Karma ▴ 310
0
votes
2
replies
684
views
What is configuration required for exome sequence analysis?
next-gen rna-seq configuration
4.4 years ago by Karma ▴ 310
13
votes
13
replies
3.1k
views
6 follow
Where can I download Clinical or Medical Exome?
Exome RNA-Seq genome clinical_exome
updated 6.5 years ago by ▴ 200 • written 6.5 years ago by ▴ 310
1
vote
1
reply
1.8k
views
What are the differences (in terms of accuracy) in using default and custom interval list (-L) for variant calling on exome sequencing data?
RNA-Seq sequencing exome sequencing
6.6 years ago by Karma ▴ 310
11
votes
4
replies
7.6k
views
Is there any way to generate interval list from available exome data?
sequencing exome mutect2 gatk
updated 6.6 years ago by 161k • written 6.6 years ago by ▴ 310
2
votes
6
replies
3.1k
views
How to generate FPKM value for each replicates?
RNA-Seq NGS cufflinks Tophat cuffdiff
updated 6.6 years ago by ▴ 260 • written 6.6 years ago by ▴ 310
2
votes
2
replies
1.6k
views
What is the algorithm or formula for converting SAM to BAM?
NGS Samtools SAM BAM
updated 6.6 years ago by 104k • written 6.6 years ago by ▴ 310
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