User: simon.vanheeringen

Reputation:
200
Status:
Trusted
Location:
Last seen:
12 months ago
Joined:
3 years, 1 month ago
Email:
s*****************@gmail.com

Posts by simon.vanheeringen

<prev • 26 results • page 3 of 3 • next >
0
votes
1
answer
827
views
1
answers
Comment: C: Feature/Motif Extraction from Sequences?
... I would say it wholly depends on the nature of your subsequent downstream comparison. What is the question and with what purpose do you want to do the analysis? Can you clarify? There's a whole body of work on k-mer/motif analysis, and you might not want/need to re-invent the wheel. For instance, i ...
written 3.0 years ago by simon.vanheeringen200
1
vote
5
answers
1.4k
views
5
answers
Answer: A: Genome Browser suggestions
... Why not use the [UCSC Genome Browser][1]? You can add tracks using track hubs and support non-standard genomes using assembly hubs, see here: https://genome.ucsc.edu/goldenpath/help/hgTrackHubHelp.html. The advantage of track hubs is that you only have to create them once, and then you can use alway ...
written 3.1 years ago by simon.vanheeringen200
0
votes
0
answers
910
views
0
answers
Tool: GimmeMotifs 0.11.1: for all your transcription factor motif needs
... I'm happy to announce the latest release of **GimmeMotifs** (0.11.1) GimmeMotifs is an analysis framework for transcription factor motif analysis written in Python. It contains command-line scripts to predict de novo motifs, scan for known motifs, identify differential motifs, calculate motif enric ...
0
votes
0
answers
979
views
0
answers
Comment: C: genomepy: download genomes the easy way
... Do you know if you are behind a proxy by any chance? ...
written 3.1 years ago by simon.vanheeringen200
0
votes
0
answers
979
views
0
answers
Comment: C: genomepy: download genomes the easy way
... The first time you run the search, it will take a long time as downloading the genome info from some providers will take time. This list will be cached locally, so subsequent queries should be faster. This cached list will expire after a week, so once in a while it will take longer again. The searc ...
written 3.1 years ago by simon.vanheeringen200
2
votes
0
answers
979
views
0
answers
Tool: genomepy: download genomes the easy way
... I would like to share a little utility that I wrote to make downloading genome sequences less of a hassle. Genomepy is a simple software package to download genome sequences that contains both command-line tools as well as a Python application programming interface (API). It supports several provid ...

Latest awards to simon.vanheeringen

Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: Identifying the orientation of a CTCF motif?
Scholar 2.9 years ago, created an answer that has been accepted. For A: Identifying the orientation of a CTCF motif?
Scholar 2.9 years ago, created an answer that has been accepted. For A: Identifying the orientation of a CTCF motif?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 878 users visited in the last hour