User: jhanks1981

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jhanks19810
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Posts by jhanks1981

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Comment: C: Custom features in IGV
... Interesting. I am on version 2.3.97 for Linux. Is there a better/more consistent viewer than IGV? ...
written 12 weeks ago by jhanks19810
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Comment: C: Custom features in IGV
... I will try that. Strange though, I've used GTF files with other feature types ("gene", "transcript") without issue. Also, I was reading about the GTF format from here: http://www.ensembl.org/info/website/upload/gff.html Edit: Yes, that did the trick. Thanks! ...
written 12 weeks ago by jhanks19810
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Comment: C: Custom features in IGV
... Sorry, the link was in the raw post, but for some reason it didn't show. The "Custo," was supposed to be "Custom". ...
written 12 weeks ago by jhanks19810
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Custom features in IGV
... I am making gtfs file with custom feature types, and I want to inspect them in IGV viewer. However, I cannot view the features if they have a non-standard attribute type (INTRON). However, if I replace the string "INTRON" with "exon", the file displays as expected. Is IGV viewer unable to display an ...
gtf features igv written 12 weeks ago by jhanks19810 • updated 12 weeks ago by Dan D6.2k

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