User: hodatn

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hodatn0
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Posts by hodatn

<prev • 14 results • page 1 of 2 • next >
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how can I get long non coding RNA from RNA-seq data
... Hello friends. Does anybody know how can I get long non-coding RNA from RNA-seq data? The genome of the organism is not available. I want to detect lncoding RNAs and analyze them. ...
rna-seq long non-coding rna written 22 months ago by hodatn0 • updated 22 months ago by i.sudbery7.3k
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Plant genes interaction pathway tool
... Dear Biostars, Is there any software or tools for drawing pathways? Except cytoscape, pathway studio and string! I have some genes which belong to a medicinal **plant** and I want to find out the interactions. ...
gene pathway metabolite pathway rna-seq written 2.3 years ago by hodatn0 • updated 2.3 years ago by Hussain Ather940
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(Closed) How Can I Find Target Genes Of A Transcription Factor with RNA seq Data?
... How Can I Find Target Genes Of A Transcription Factor with RNA seq Data?( For plants) ...
tf rna-seq target written 2.5 years ago by hodatn0 • updated 2.5 years ago by Jake Warner800
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Comment: C: How can I Find modules of a gene?
... I explained more. Thanks ...
written 2.5 years ago by hodatn0
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Comment: C: How can I Find modules of a gene?
... Thank you. I explained more. ...
written 2.5 years ago by hodatn0
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How can I Find modules of a gene?
... I'm working on Transcription factors involved in secondary metabolite. This plant doesn't have whole genome sequence, So we did RNA-seq analysis for it. From RNA-seq analysis and data, now, I have a list of Transcription factors which are involved in secondary metabolites. I want to find the modules ...
plants rna-seq modules written 2.5 years ago by hodatn0 • updated 2.5 years ago by colindaven2.1k
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TF networks,modules, gene targets and binding sites
... Hello Biostars, Well,actually I have some TFs which are involved in secondary metabolites in medicinal plants, I need to find: 1) in what networks they exist? 2) Find their modules, 3)find their target genes, 4) and find all their binding sites... I really appreciate if you help me in these res ...
targets networks tfs modules rna-seq written 2.5 years ago by hodatn0
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Comment: C: Finding target genes of a TF
... Thank you. But what do you mean by " TF-KO"? Would you please explain more, or put the links of the databases that are able to find Target genes of a TF? ...
written 2.5 years ago by hodatn0
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Comment: C: Finding target genes of a TF
... Thank you so much.Well,actually I have some TFs, I need to find: 1) in what networks they exist? 2) Find their modules, 3)find their target genes, 4) and find all their binding sites, The JASKAR CORE Plantae that you introduced is helpful, But I don't know how should I work with BEDOPS!!! ...
written 2.5 years ago by hodatn0
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Finding target genes of a TF
... How Can I Find Target Genes Of A Transcription Factor in plants? I mean I need databases that do this job for plants TFs. (I have RNA-seq Data) ...
plants tf rna-seq target written 2.5 years ago by hodatn0 • updated 2.5 years ago by Alex Reynolds29k

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