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Comment: Comment: Help with subset seurat object by a column in metadata
3 days ago by bk11 ★ 3.0k
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1
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282
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Answer: Answer: Dealing with 2 different layers of counts within RNA assay in seurat
3 days ago by bk11 ★ 3.0k
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319
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Comment: Comment: Pedigree information
7 days ago by bk11 ★ 3.0k
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204
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Answer: Answer: Merging bfiles
7 days ago by bk11 ★ 3.0k
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268
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Comment: Comment: Extracting column from one seurat object based on common column and adding to th
10 days ago by bk11 ★ 3.0k
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229
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Comment: Comment: Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
11 days ago by bk11 ★ 3.0k
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0
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330
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Answer: Answer: Best approach for identifying top proteins in a single cluster in single-cell an
14 days ago by bk11 ★ 3.0k
2
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0
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365
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Answer: Answer: High inconsistency between edgeR and DESeq2
18 days ago by bk11 ★ 3.0k
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1
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409
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Answer: Answer: Best practice for gene ontology/pathway/geneset enrichment in 10x data
18 days ago by bk11 ★ 3.0k
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0
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267
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Answer: Answer: Plink HWE QC question
18 days ago by bk11 ★ 3.0k
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1
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270
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Comment: Comment: How to merge two species of scATAC data
4 weeks ago by bk11 ★ 3.0k
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1
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289
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Comment: Comment: CCA integration
4 weeks ago by bk11 ★ 3.0k
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419
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Answer: Answer: Enhanced Volcano not working on ANY data. Coerces everything to NaN
5 weeks ago by bk11 ★ 3.0k
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0
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354
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Comment: Comment: Using findmarker of seurat with different test.use but getting the same resulat.
5 weeks ago by bk11 ★ 3.0k
0
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0
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290
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Answer: Answer: Updating phenotype column for .ped .fam files (PLINK --pheno not working)
5 weeks ago by bk11 ★ 3.0k
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1.1k
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Answer: Answer: Remove part of a header in a fasta file
6 weeks ago by bk11 ★ 3.0k
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0
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347
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Comment: Comment: Seurat V5 Subscript Out of Bounds Error
6 weeks ago by bk11 ★ 3.0k
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1
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302
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Comment: Comment: R package to visualize multiple aligned chromatograms
7 weeks ago by bk11 ★ 3.0k
1
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1
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359
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Answer: Answer: Appending a Poly-A Tail to a Reference Transcriptome
8 weeks ago by bk11 ★ 3.0k
2
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1
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474
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Answer: Answer: Plotting LD heat map with plink.ld result
8 weeks ago by bk11 ★ 3.0k
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0
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499
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Comment: Comment: Last against ncbi nr database
8 weeks ago by bk11 ★ 3.0k
1
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0
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202
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Comment: Comment: QC for UKB GWAS data
8 weeks ago by bk11 ★ 3.0k
1
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1
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499
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Comment: Comment: Last against ncbi nr database
8 weeks ago by bk11 ★ 3.0k
1
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1
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367
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Comment: Comment: Where to find open access data of SNP arrays to perform GWAS
8 weeks ago by bk11 ★ 3.0k
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0
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342
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Comment: Comment: Unable to open HDF5 file
8 weeks ago by bk11 ★ 3.0k
1
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0
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346
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Comment: Comment: plink2 giving multiple errors
9 weeks ago by bk11 ★ 3.0k
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1
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346
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Comment: Comment: plink2 giving multiple errors
9 weeks ago by bk11 ★ 3.0k
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0
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232
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Comment: Comment: how to visualize Geno Ontology classification
11 weeks ago by bk11 ★ 3.0k
1
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1
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247
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Answer: Answer: Remove bacterial and protoza from Kraken2 EuPathDB
11 weeks ago by bk11 ★ 3.0k
1
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0
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775
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Comment: Comment: Can't increase font size for x axis
12 weeks ago by bk11 ★ 3.0k
2
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1
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775
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Answer: Answer: Can't increase font size for x axis
12 weeks ago by bk11 ★ 3.0k
0
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0
replies
1.6k
views
Answer: Answer: Good Bioinformatics Jokes/Puns?
3 months ago by bk11 ★ 3.0k
0
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1
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561
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Answer: Answer: Should I normalize and scale my data again after doing subset(seu, idents=" ") i
3 months ago by bk11 ★ 3.0k
0
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1
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607
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Comment: Comment: Histogram of normalized counts for each cell type
3 months ago by bk11 ★ 3.0k
1
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0
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702
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Comment: Comment: ROH and Manhattan plot
3 months ago by bk11 ★ 3.0k
2
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1
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607
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Answer: Answer: Histogram of normalized counts for each cell type
updated 3 months ago by 44k • written 3 months ago by ★ 3.0k
1
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1
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702
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Comment: Comment: ROH and Manhattan plot
3 months ago by bk11 ★ 3.0k
0
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1
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769
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Comment: Comment: Subset cells in Seurat data based on reads and gene expression
updated 3 months ago by 44k • written 3 months ago by ★ 3.0k
0
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1
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769
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Answer: Answer: Subset cells in Seurat data based on reads and gene expression
updated 3 months ago by 44k • written 3 months ago by ★ 3.0k
1
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1
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547
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Answer: Answer: Am I getting TPM correct from tcga?
updated 3 months ago by 44k • written 3 months ago by ★ 3.0k
0
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0
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567
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Comment: Comment: METAL ERROR: The command you issued could not be processed ...
3 months ago by bk11 ★ 3.0k
2
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1
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468
views
Answer: Answer: Consistent cluster coloring
3 months ago by bk11 ★ 3.0k
1
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1
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619
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Answer: Answer: Slot to pull data from for DoHeatmap
3 months ago by bk11 ★ 3.0k
1
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1
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409
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Comment: Comment: Phasing human samples with Shapeit4
3 months ago by bk11 ★ 3.0k
1
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0
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310
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Answer: Answer: MGI DNBelab C Series High-throughput Single-cell RNA Library Preparation Set V3.
3 months ago by bk11 ★ 3.0k
1
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1
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702
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Comment: Comment: ROH and Manhattan plot
3 months ago by bk11 ★ 3.0k
1
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0
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328
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Answer: Answer: Reading files from different types as H5AD
3 months ago by bk11 ★ 3.0k
1
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0
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450
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Answer: Answer: Maximum bits in ggseqlogo is less then 2?
3 months ago by bk11 ★ 3.0k
0
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0
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359
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Comment: Comment: How to find column names for ENCODE ATAC-seq data?
3 months ago by bk11 ★ 3.0k
2
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0
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451
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Answer: Answer: Seurat object with multiple PCAs/UMAPs from different assays
3 months ago by bk11 ★ 3.0k
469 results • Page 1 of 10
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