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Answer: Answer: GOSt Plot
6 months ago by bk11 ★ 2.3k
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1.2k
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Answer: Answer: Help with error running velocyto
6 months ago by bk11 ★ 2.3k
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1.0k
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Answer: Answer: Search RCSB with a list of protein names?
6 months ago by bk11 ★ 2.3k
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520
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Answer: Answer: Imputation server failing to see samples in VCF files
6 months ago by bk11 ★ 2.3k
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1.3k
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Answer: Answer: How to convert data in r?
updated 6 months ago by 43k • written 6 months ago by ★ 2.3k
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1.8k
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Answer: Answer: Converting hdf5 file to loom file
6 months ago by bk11 ★ 2.3k
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1.8k
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Answer: Answer: How to plot proportion of cells in each cluster with scanpy?
6 months ago by bk11 ★ 2.3k
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901
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Answer: Answer: Violin plot (Monocle 3) - Troubleshooting
updated 6 months ago by 43k • written 6 months ago by ★ 2.3k
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496
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Answer: Answer: miRDeep2 - identifying miRNAs from deep sequencing data
6 months ago by bk11 ★ 2.3k
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898
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Answer: Answer: How to display all top markers in the heatmap by DoHeatmap (Seurat) when there a
updated 7 months ago by 43k • written 7 months ago by ★ 2.3k
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1.4k
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Answer: Answer: Inflated GWAS test statistic after merging multiple batches of genotype dataset
7 months ago by bk11 ★ 2.3k
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999
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Answer: Answer: differential gene expression analysis comparing different conditions using scRNA
7 months ago by bk11 ★ 2.3k
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406
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Answer: Answer: Automatic Cluster Annotation to the subsets of immune cells
7 months ago by bk11 ★ 2.3k
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703
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Answer: Answer: Data Import Issue detectRUNS R
7 months ago by bk11 ★ 2.3k
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766
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Answer: Answer: GTF annotation file for Hg38 Dec 2013 (First Release)
7 months ago by bk11 ★ 2.3k
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441
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Answer: Answer: How to split grouping information in a single expression matrix?
7 months ago by bk11 ★ 2.3k
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780
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Answer: Answer: Running Enrichr in python using a background gene list
7 months ago by bk11 ★ 2.3k
2
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2.8k
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Answer: Answer: Running python script in slurm using conda environment
7 months ago by bk11 ★ 2.3k
2
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0
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502
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Answer: Answer: how to remove description from header?
7 months ago by bk11 ★ 2.3k
1
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0
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834
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Answer: Answer: summarize consecutive columns over a data frame
updated 7 months ago by 43k • written 7 months ago by ★ 2.3k
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479
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Answer: Answer: Choosing background for ORA using scrnaseq
7 months ago by bk11 ★ 2.3k
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596
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Answer: Answer: Michigan Imputation Server low reference overlap
7 months ago by bk11 ★ 2.3k
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1
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1.1k
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Answer: Answer: Is there a way to get a list of all homogygous sites for each sample with plink
7 months ago by bk11 ★ 2.3k
2
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598
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Answer: Answer: Consensus Cluster takes normalized gene counts or raw gene counts?
7 months ago by bk11 ★ 2.3k
3
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955
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Answer: Answer: Could not view/find meta.data and Error merging three seurat object
7 months ago by bk11 ★ 2.3k
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1.8k
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Answer: Answer: How to limit fasta header to 40 characters?
7 months ago by bk11 ★ 2.3k
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0
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656
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Answer: Answer: GO annotation in R using library(org.Hs.eg.db)
7 months ago by bk11 ★ 2.3k
2
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1
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1.8k
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Answer: Answer: How to limit fasta header to 40 characters?
7 months ago by bk11 ★ 2.3k
2
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0
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593
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Answer: Answer: About scdbfinder
7 months ago by bk11 ★ 2.3k
4
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643
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Answer: Answer: How to calculate GC content of reads that mapped to a specific gene?
7 months ago by bk11 ★ 2.3k
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1
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1.2k
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Answer: Answer: R based query about making pairwise matrix
7 months ago by bk11 ★ 2.3k
2
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2
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1.5k
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Answer: Answer: Help with Error: Required version of NumPy not available: installation of Numpy
7 months ago by bk11 ★ 2.3k
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1
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1.2k
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Answer: Answer: CellRanger output more cells than specified using --force-cells? Why?
7 months ago by bk11 ★ 2.3k
0
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1
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1.5k
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Answer: Answer: Negative Expression in RNA Assay on Dot Plot After SCT Transform
7 months ago by bk11 ★ 2.3k
0
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0
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418
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Answer: Answer: Checking a SNP as common SNP or not using UCSC genome browser
7 months ago by bk11 ★ 2.3k
1
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0
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323
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Answer: Answer: tfea.chip mouse server
7 months ago by bk11 ★ 2.3k
2
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1
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843
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Answer: Answer: Integration in single cell RNAseq: What does it mean?
7 months ago by bk11 ★ 2.3k
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882
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Answer: Answer: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
7 months ago by bk11 ★ 2.3k
2
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1
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646
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Answer: Answer: Help with error using ClosetFeature() in Signac
7 months ago by bk11 ★ 2.3k
1
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1
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530
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Answer: Answer: Non-coding DNA structure prediction recomendation
7 months ago by bk11 ★ 2.3k
1
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1
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966
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Answer: Answer: How to construct an adjacency matrix based on output of nearest neighbors sear
7 months ago by bk11 ★ 2.3k
0
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0
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729
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Answer: Answer: How to Add Mutations to the sequence
7 months ago by bk11 ★ 2.3k
0
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0
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1.1k
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Answer: Answer: Identifying transcription factors for a list of genes
updated 6 months ago by 43k • written 7 months ago by ★ 2.3k
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559
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Answer: Answer: Trouble with breseq Bam2Cov
7 months ago by bk11 ★ 2.3k
0
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1
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814
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Answer: Answer: A cluster expresses two types of cells' markers in scRNA-seq
7 months ago by bk11 ★ 2.3k
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1
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604
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Answer: Answer: Heatmap ChIP-seq average signal
7 months ago by bk11 ★ 2.3k
1
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1
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969
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Answer: Answer: Output FindMarkers()
7 months ago by bk11 ★ 2.3k
1
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1
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2.6k
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Answer: Answer: How to use the Combat-seq for batch effect removal?
7 months ago by bk11 ★ 2.3k
0
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1
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814
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Answer: Answer: Microarray DGE analysis
7 months ago by bk11 ★ 2.3k
2
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1
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633
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Answer: Answer: heatmap() in r assigning incorrect scale color to only first column values
7 months ago by bk11 ★ 2.3k
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