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Answer: Answer: How to import a gtf file in R so that it appears in tabular format as if it were
9 months ago by acvill ▴ 340
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601
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Answer: Answer: Find a known motif in new sequences
9 months ago by acvill ▴ 340
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652
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Answer: Answer: Is there a way to prove that two VCFs came from the same person?
9 months ago by acvill ▴ 340
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562
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Answer: Answer: prevalence and detection threshold of core microbiome
9 months ago by acvill ▴ 340
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786
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Comment: Comment: phage genome submission in ncbi genebank
10 months ago by acvill ▴ 340
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548
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Answer: Answer: Peaks annotation on bacterial genome
11 months ago by acvill ▴ 340
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2
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What is the NCBI's definition of an "atypical genome"?
NCBI genome annotation
updated 12 months ago by ▴ 720 • written 12 months ago by ▴ 340
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Comment: Comment: SKAT in R
13 months ago by acvill ▴ 340
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1.2k
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Comment: Comment: implementation of k-mer counting from krakenuniq to kraken2
13 months ago by acvill ▴ 340
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632
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Answer: Answer: qtl, eqtl, sqtl
15 months ago by acvill ▴ 340
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657
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Answer: Answer: Is there a R equivalent of ete3 reconcile?
15 months ago by acvill ▴ 340
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1.5k
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Answer: Answer: R is assigning unique identifier to the same column names when reading in as a d
15 months ago by acvill ▴ 340
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Answer: Answer: Why some reads have MAPQ = 0 with bwa and look good?
16 months ago by acvill ▴ 340
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1.6k
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Comment: Comment: GO and KEGG enrichment analysis for non-model organism
16 months ago by acvill ▴ 340
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2
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786
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Comment: Comment: Assigning an name based on matching three possible cells/columns
17 months ago by acvill ▴ 340
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941
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Comment: Comment: Remove rRNA for RNA-Seq Analysis
17 months ago by acvill ▴ 340
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Comment: Comment: downloading genomes in fasta format from accession ids
17 months ago by acvill ▴ 340
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1.0k
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Answer: Answer: Filtering a fasta file based on blast results file
18 months ago by acvill ▴ 340
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476
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Answer: Answer: Why 6mA data are always 41 bps long?
18 months ago by acvill ▴ 340
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596
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Answer: Answer: R programming
19 months ago by acvill ▴ 340
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662
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Comment: Comment: working piRNA prediction tools
19 months ago by acvill ▴ 340
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925
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Comment: Comment: How to split two rows in multiples row in R
19 months ago by acvill ▴ 340
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684
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Where to find an asymmetric nucleotide substitution matrix with IUPAC encoding?
Bioconductor tidyverse sequence-alignment R Biostrings
20 months ago by acvill ▴ 340
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684
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Answer: Answer: Where to find an asymmetric nucleotide substitution matrix with IUPAC encoding?
20 months ago by acvill ▴ 340
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797
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Comment: Comment: Duplication genes in Mitochondrial genome ?
21 months ago by acvill ▴ 340
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Comment: Comment: why bowtie2 doesn’t report longer than 500bp inserts?
22 months ago by acvill ▴ 340
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927
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Comment: Comment: Bulk RNA-seq with genome but without gene annotation
22 months ago by acvill ▴ 340
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816
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Answer: Answer: why bowtie2 doesn’t report longer than 500bp inserts?
22 months ago by acvill ▴ 340
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792
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Comment: Comment: conditional count of occurrence in R
23 months ago by acvill ▴ 340
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792
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Answer: Answer: conditional count of occurrence in R
24 months ago by acvill ▴ 340
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21k
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Comment: Comment: how to rearrange fasta file according to its length
2.1 years ago by acvill ▴ 340
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419
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Comment: Comment: metagenomics analysis
2.2 years ago by acvill ▴ 340
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1.4k
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Answer: Answer: MetaPhlAn Visualization using stacked barplot
2.2 years ago by acvill ▴ 340
2
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1
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928
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Answer: Answer: Difference between LIGR-seq and PARIS methods
2.2 years ago by acvill ▴ 340
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38k
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Comment: Comment: Transform a GTF file into a data frame in R
2.4 years ago by acvill ▴ 340
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38k
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Answer: Answer: Transform a GTF file into a data frame in R
2.4 years ago by acvill ▴ 340
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2.3k
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Comment: Comment: Count strand-specific 5' / 3' coverage across whole genome for paired-end fragme
2.5 years ago by acvill ▴ 340
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3
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2.3k
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Count strand-specific 5' / 3' coverage across whole genome for paired-end fragments
bedtools RNA-seq bam strand-specific
2.5 years ago by acvill ▴ 340
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2.3k
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Answer: Answer: Count strand-specific 5' / 3' coverage across whole genome for paired-end fragme
2.5 years ago by acvill ▴ 340
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