User: apurvamehta2015

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Posts by apurvamehta2015

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How to create position specific scoring matrix using standalone blast
... I want to generate Position Specific Scoring Matrix and later to derive features from it for my application. I am using standalone blast algorithm PSI BLAST to generate PSSM, following are my questions: 1. Is it required to use only fasta file as database to construct PSSM? 2. Where to find nrdb9 ...
pssm blast written 6 months ago by apurvamehta20150
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Fold recognition application
... I have read few papers regarding protein fold recognition using Machine learning algorithms. I have a doubt, after able to build a good protein fold classifier what next can be done using that classifier with the fold of a protein sequence classified/recognized. ...
application of protein fold recognition written 7 months ago by apurvamehta20150 • updated 7 months ago by cdsouthan1.8k
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Use of protein secondary structure as query
... I want to know, is there any tool/ web server that take secondary structure of protein as query to retrieve anything, say tertiary structure of protein or other similar/ homologous protein sequence or secondary structure of proteins? ...
protein secondary structure written 15 months ago by apurvamehta20150

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