User: sanariyaz21

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sanariyaz2110
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1 month, 1 week ago
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1 month, 3 weeks ago
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Posts by sanariyaz21

<prev • 14 results • page 1 of 2 • next >
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Comment: C: platypus building error
... i read that and tried downloading the background files but while building htslib i have downloaded htslib for platypus while bulding htslib i downloaded and then started with it i got the result as follows : uhail@suhail-HP-Notebook:~/Desktop/htslib-1.5$ ./configure checking for gcc... gcc checki ...
written 5 weeks ago by sanariyaz2110
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Comment: C: platypus building error
... i tried these commands as follows but still get the same error: export C_INCLUDE_PATH=/home/suhail/Desktop/Platypus_0.8.1/include export LIBRARY_PATH=/home/suhail/Desktop/Platypus_0.8.1/lib export LD_ LIBRARY_PATH=/home/suhail/Desktop/Platypus_0.8.1/lib kindly suggest me something specific as i ...
written 6 weeks ago by sanariyaz2110
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platypus building error
... hi , i am trying to intsall platypus using the following commands : for compilinf platypus: sudo apt-get install libz-dev and i get the following : Reading package lists... Done Building dependency tree Reading state information... Done Note, selecting 'zlib1g-dev' instead of 'libz-dev' z ...
platypus error written 6 weeks ago by sanariyaz2110 • updated 6 weeks ago by sayerskt10
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Comment: C: picard installation failure
... thanks it worked i was not invoking it correctly. now its working well ...
written 6 weeks ago by sanariyaz2110
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Comment: C: picard installation failure
... it didnt worked means as follows : i ahve tried installing older version picardtools-1.128 moved it to another directory and given the path but when executed the command it didnt worked too. for this package i used following commands: chmod 755* (after goint in the directory) cd .. cp -r picard ~/ ...
written 6 weeks ago by sanariyaz2110
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Comment: C: picard installation failure
... it will be appreciated if somebody can just guide me with the installation commands as like many others i am new to ngs data analysis . help will be appreciated . thank you ...
written 6 weeks ago by sanariyaz2110
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picard installation failure
... hi i am trying to install picard tools in my system i tried installing and older version picardtools-1.128 simply by downloading it https://github.com/broadinstitute/picard/releases/tag/1.128 which didnt worked so i downloaded latest release and gave the command as follows : https://github. ...
software error picard written 6 weeks ago by sanariyaz2110 • updated 8 days ago by simon.vanheeringen50
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Comment: C: samtools not sorting bam file
... thank u it worked . i thought it is giving error due to refrence genome or improper istallation ...
written 6 weeks ago by sanariyaz2110
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Comment: C: samtools not sorting bam file
... kindly tell me what should i do with this one is there any issue with samtools ...
written 6 weeks ago by sanariyaz2110
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samtools not sorting bam file
... suhail@suhail-HP-Notebook:~/Desktop/data/FAstq$ samtools sort output.bam -n output.sort [bam_sort] Use -T PREFIX / -o FILE to specify temporary and final output files Usage: samtools sort [options...] [in.bam] Options: -l INT Set compression level, from 0 (uncompressed) to 9 (best) -m INT ...
error sorting written 6 weeks ago by sanariyaz2110

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