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Comment: C: Is using WGCNA package for analyzing 12 samples in 3 studies possible?
4.8 years ago by Kevin Blighe 89k
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Answer: A: TCGA: How to detect normal and tumor samples in PRAD dataset?
4.8 years ago by Kevin Blighe 89k
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4.6k
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Comment: C: differential expression- coding genes
4.8 years ago by Kevin Blighe 89k
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897
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Answer: A: 3 patients with 2 samples collected pre and post clinical intervention
4.8 years ago by Kevin Blighe 89k
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2.6k
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Comment: C: Is using WGCNA package for analyzing 12 samples in 3 studies possible?
4.8 years ago by Kevin Blighe 89k
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4.6k
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Answer: A: differential expression- coding genes
4.8 years ago by Kevin Blighe 89k
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2.6k
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Answer: A: Is using WGCNA package for analyzing 12 samples in 3 studies possible?
4.8 years ago by Kevin Blighe 89k
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Answer: A: No space left on device error with deeptools bamCompare
4.8 years ago by Kevin Blighe 89k
68
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5
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49k
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Answer: A: PCA in a RNA seq analysis
4.8 years ago by Kevin Blighe 89k
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1.5k
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Answer: A: Comparing gene expression in cancer vs. control
4.8 years ago by Kevin Blighe 89k
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975
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Answer: A: GEO2R software 'BART' not working? and is there any good interactive volcano plo
4.8 years ago by Kevin Blighe 89k
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60k
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Comment: C: Definition of minor and major allele and connection with risk, effect, wildtype
4.8 years ago by Kevin Blighe 89k
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2.6k
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Comment: C: WGCNA negative values
4.8 years ago by Kevin Blighe 89k
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1.6k
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Comment: C: what algorithm can be used to prove that two different diseases have similar gen
4.8 years ago by Kevin Blighe 89k
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1.6k
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Comment: C: what algorithm can be used to prove that two different diseases have similar gen
4.8 years ago by Kevin Blighe 89k
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1
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2.0k
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Answer: A: Analyzing processed RNA-seq data: is this TMM normalized?
4.8 years ago by Kevin Blighe 89k
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1
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3.5k
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Comment: C: DESEq2 error - 'DESeqDataSet' object superclass 'RectangularData' not defined in
4.8 years ago by Kevin Blighe 89k
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1.9k
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Comment: C: plink --interaction --parameters!!
4.8 years ago by Kevin Blighe 89k
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1
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1.7k
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Answer: A: Duplicate SNP IDs in TOPMed Imputation output for gwas data
4.8 years ago by Kevin Blighe 89k
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1
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1.9k
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Comment: C: plink --interaction --parameters!!
4.8 years ago by Kevin Blighe 89k
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1
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731
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Comment: C: How much contaminant is too much ?
4.8 years ago by Kevin Blighe 89k
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1
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3.9k
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Comment: C: WGCNA trait question
4.8 years ago by Kevin Blighe 89k
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4.5k
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Comment: C: Cuffmerge error(?) for RNA-seq
4.8 years ago by Kevin Blighe 89k
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1
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2.6k
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Comment: C: WGCNA negative values
4.8 years ago by Kevin Blighe 89k
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1
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2.6k
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Comment: C: WGCNA negative values
4.8 years ago by Kevin Blighe 89k
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5.5k
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Comment: C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
4.8 years ago by Kevin Blighe 89k
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1.6k
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Comment: C: interprating PCA plot
4.8 years ago by Kevin Blighe 89k
5
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1
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8.4k
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Answer: A: heatmaps of RNA-seq data: what are accepted normalizations?
4.8 years ago by Kevin Blighe 89k
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1
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1.9k
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Comment: C: DESeq2 for DEG in R
4.8 years ago by Kevin Blighe 89k
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0
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993
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Answer: A: APT rma-sketch gene has same values as exon - Affymetrix Human Exon 1.0 ST Array
4.8 years ago by Kevin Blighe 89k
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0
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20k
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Comment: C: plotting a dotplot with topGO output
4.8 years ago by Kevin Blighe 89k
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1
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1.6k
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Comment: C: How do I pass the reference genome to Primer3
4.8 years ago by Kevin Blighe 89k
2
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1
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3.2k
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Answer: A: RNA-seq power estimation using ssizeRNA program
4.8 years ago by Kevin Blighe 89k
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1.7k
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Comment: C: Agilent microarray data analysis end in no significant genes ?
4.8 years ago by Kevin Blighe 89k
1
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1
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2.3k
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Comment: C: bcftools consensus equivalent for VarScan output
4.8 years ago by Kevin Blighe 89k
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1
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3.4k
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Comment: C: Merging WGS SNP array data
4.8 years ago by Kevin Blighe 89k
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1
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3.4k
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Comment: C: Merging WGS SNP array data
4.8 years ago by Kevin Blighe 89k
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26k
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Comment: C: GO analysis using topGO
4.8 years ago by Kevin Blighe 89k
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5.4k
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Comment: C: issues regarding topGO usage
4.8 years ago by Kevin Blighe 89k
11
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3
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20k
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Answer: A: plotting a dotplot with topGO output
4.8 years ago by Kevin Blighe 89k
9
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1
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5.4k
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Answer: A: issues regarding topGO usage
4.8 years ago by Kevin Blighe 89k
2
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1
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2.3k
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Answer: A: bcftools consensus equivalent for VarScan output
4.8 years ago by Kevin Blighe 89k
1
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2
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1.7k
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Answer: A: Agilent microarray data analysis end in no significant genes ?
4.8 years ago by Kevin Blighe 89k
0
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1
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2.2k
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Comment: C: 2-colour (channel) Agilent data
4.8 years ago by Kevin Blighe 89k
0
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0
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8.3k
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Comment: C: plotting PCA PLINK eigenvec output in R
4.8 years ago by Kevin Blighe 89k
0
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1
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8.3k
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Answer: A: plotting PCA in R
4.8 years ago by Kevin Blighe 89k
3
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1
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5.5k
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Answer: A: Removal of 'low' counts before DESeq2 - what threshold?
4.8 years ago by Kevin Blighe 89k
1
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2
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2.2k
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Answer: A: 2-colour (channel) Agilent data
4.8 years ago by Kevin Blighe 89k
0
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0
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21k
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Comment: C: Sample names for TCGA data from GDC-legacy archive
4.8 years ago by Kevin Blighe 89k
1
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0
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856
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Comment: C: Do read group names have effect on marking duplicates using GATK?
4.8 years ago by Kevin Blighe 89k
9,959 results • Page 23 of 200
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