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Posts by Evoevo
... Sorry, I might be misusing the word 'assembled'. I'm just starting to play around with bioinformatics and I'm still wrapping my head around the jargon. For clarity, I took a mapped .bam file from the 1000genomes project and ran it through samtools mpileup, passed that to bcftools call, then used v ...
... I've used a samtools, bcftools pipeline to generate a diploid consensus sequence. The consensus sequences are in fastq format. I expected that I'd get two sequences in the fastq files - one for each homologous chromosome. But when I open them, I can only see a single sequence identifier. How does FA ...
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