User: rosenkranz

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rosenkranz0
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Posts by rosenkranz

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Answer: A: Rnammer Gives Mysterious Error
... Don't know if this is still interesting but after fixing lot of problems I finally managed to run RNAmmer 1.2. There is a strange part in the rnammer Perl script that looks like this: chomp ( my $uname = `uname`); my $HMMSEARCH_BINARY; my $PERL; if ( $uname eq "Linux" ) { $HMMSEARCH_BINARY = "/u ...
written 4 months ago by rosenkranz0
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Answer: A: Pipeline for phasiRNA detection
... There are currently 2 published tools that can predict phasiRNAs. First one is PhaseTank, which runs on Linux and uses bowtie1 for mapping small RNA sequences to a reference. PhaseTank searches for phasiRNAs using the method described in the papers you listed above. The 210 and 240 nt sliding window ...
written 4 months ago by rosenkranz0

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