User: k_mer

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k_mer0
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Posts by k_mer

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Comment: C: Error for "gpar" while using pheatmap!
... I'm having the same issue and understand how it needs to be resolved, but how exactly did you update the rownames in the df (as in the example above) passed to annotation_col to match colnames? ...
written 2.8 years ago by k_mer0
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Comment: C: Softwares for gene annotation
... Which would be recommended between Trinotate and Annocript? ...
written 2.8 years ago by k_mer0
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Comment: C: KEGG enrichment for non-model organism
... I'm looking for the answer to a similar question. Were you able to use your own assembly as background in clusterProfiler? ...
written 2.9 years ago by k_mer0
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Tools for functional enrichment analysis using own genome annotation
... I am analyzing RNA-seq data for 5 different bacterial strains, 3 of which are "model" organisms (found in common databases) and 2 of which are not (e.g. not found in KEGG). I've annotated their genomes with BlastKOALA and InterProScan for KEGG and GO terms. 1) Which tools are best to use for functio ...
kegg rna-seq go functional enrichment analysis written 2.9 years ago by k_mer0 • updated 2.9 years ago by Jean-Karim Heriche22k

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