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2
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single cell RNA-seq
RNA-Seq single-cell scRNA-seq
updated 3.2 years ago by ★ 14k • written 3.2 years ago by ▴ 90
1
vote
1
reply
3.6k
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Transforming RNA-seq data- (tpms) - what is the best practice for dealing with zeros for the purpose of deconvolution?
RNA-Seq deconvolution tpm cibersort
4.1 years ago by nancy ▴ 90
2
votes
1
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821
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RNA-seq data analysis for differential expression of a single gene
RNA-Seq
updated 4.2 years ago by 13k • written 4.2 years ago by ▴ 90
0
votes
1
reply
964
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RNA-seq data analysis to detect dosage effect or proportional increase/decrease in expression across a series
RNA-Seq DESeq2 dosage effect
updated 4.5 years ago by 20 • written 4.6 years ago by ▴ 90
0
votes
1
reply
881
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Are there minimum requirements from a de novo genome assembly for it to be suitably used as a reference for SNP calling?
SNP Assembly Reference Genome snp wgs
4.5 years ago by nancy ▴ 90
14
votes
9
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2.7k
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How to filter for samples that show good concordance across replicates in DESEQ2 count data from RNA-SEQ?
RNA-Seq DESeq2 replicates prepDE.py R
updated 4.7 years ago by 16k • written 4.7 years ago by ▴ 90
1
vote
1
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1.8k
views
How to assess extent of cell-type admixtures from bulk RNA-seq data for a single tissue?
deconvolution RNA-Seq scRNA-seq cellMix
updated 4.7 years ago by ★ 1.6k • written 4.7 years ago by ▴ 90
2
votes
9
replies
1.6k
views
hclust heatmap clustering produce different relationships with fpkm versus rlog transformed coun
RNA-Seq heatmap hclust DESEQ2 PREPDE.PY
updated 4.7 years ago by 84k • written 4.7 years ago by ▴ 90
0
votes
0
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1.4k
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What measure should be used to calculate fold-change while using Ballgown to compare D.E genes between 2 conditions?
RNA-Seq Hisat2 Ballgown Stringtie
4.9 years ago by nancy ▴ 90
2
votes
0
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1.9k
views
stringtie + ballgown for multivariate analysis of rna-seq data
RNA-Seq stringtie ballgown multivariate
5.2 years ago by nancy ▴ 90
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