Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
2
votes
1
reply
1.1k
views
single cell RNA-seq
RNA-Seq single-cell scRNA-seq
updated 5.6 years ago by ★ 19k • written 5.6 years ago by ▴ 90
1
vote
1
reply
4.1k
views
Transforming RNA-seq data- (tpms) - what is the best practice for dealing with zeros for the purpose of deconvolution?
RNA-Seq deconvolution tpm cibersort
6.5 years ago by nancy ▴ 90
2
votes
1
reply
1.2k
views
RNA-seq data analysis for differential expression of a single gene
RNA-Seq
updated 6.5 years ago by 13k • written 6.5 years ago by ▴ 90
0
votes
1
reply
1.3k
views
RNA-seq data analysis to detect dosage effect or proportional increase/decrease in expression across a series
RNA-Seq DESeq2 dosage effect
updated 6.9 years ago by 20 • written 7.0 years ago by ▴ 90
0
votes
1
reply
1.3k
views
Are there minimum requirements from a de novo genome assembly for it to be suitably used as a reference for SNP calling?
SNP Assembly Reference Genome snp wgs
6.9 years ago by nancy ▴ 90
14
votes
9
replies
4.5k
views
How to filter for samples that show good concordance across replicates in DESEQ2 count data from RNA-SEQ?
RNA-Seq DESeq2 replicates prepDE.py R
updated 7.0 years ago by 21k • written 7.1 years ago by ▴ 90
1
vote
1
reply
2.3k
views
How to assess extent of cell-type admixtures from bulk RNA-seq data for a single tissue?
deconvolution RNA-Seq scRNA-seq cellMix
updated 7.1 years ago by ★ 2.1k • written 7.1 years ago by ▴ 90
2
votes
9
replies
2.6k
views
hclust heatmap clustering produce different relationships with fpkm versus rlog transformed coun
RNA-Seq heatmap hclust DESEQ2 PREPDE.PY
updated 7.1 years ago by 89k • written 7.1 years ago by ▴ 90
0
votes
0
replies
1.8k
views
What measure should be used to calculate fold-change while using Ballgown to compare D.E genes between 2 conditions?
RNA-Seq Hisat2 Ballgown Stringtie
7.3 years ago by nancy ▴ 90
2
votes
0
replies
2.3k
views
stringtie + ballgown for multivariate analysis of rna-seq data
RNA-Seq stringtie ballgown multivariate
7.6 years ago by nancy ▴ 90
10 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6