User: jayeshkumarsundaram

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Posts by jayeshkumarsundaram

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Comment: A: Paired-End Data Only Has One Read Per Spot
... https://www.biostars.org/p/348888/ Did you find out why? ...
written 6 months ago by jayeshkumarsundaram0
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Comment: C: Problem: "Pair-end" reads scRNA seq data (Drop-seq)
... I will try to get the raw paired-end fastq data files. ...
written 6 months ago by jayeshkumarsundaram0
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Comment: C: Problem: "Pair-end" reads scRNA seq data (Drop-seq)
... Drop-seq experiments involve paired end sequencing. I am also sure that they have done paired end sequencing. Looks like they might have done some processing and submitted the data. But I couldn't not figure out how much they have processed the data. I also wonder why they didn't submit the proper r ...
written 6 months ago by jayeshkumarsundaram0
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Problem: "Pair-end" reads scRNA seq data (Drop-seq)
... In case of Drop-seq, we have paired end data. Read 1: Cell code + UMI (unique molecule identifier) Read 2: The transcript information But I have a problem/doubt with the sample I am working on. The sample I am using is the following: https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR6261587 ...
next-gen alignment rna-seq written 6 months ago by jayeshkumarsundaram0 • updated 6 months ago by paulranum1130

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