User: Jung-ho Kong

gravatar for Jung-ho Kong
Reputation:
0
Status:
New User
Last seen:
1 month, 2 weeks ago
Joined:
2 years, 8 months ago
Email:
b***********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by Jung-ho Kong

<prev • 10 results • page 1 of 1 • next >
0
votes
0
answers
153
views
0
answers
transcriptome and methylome dataset for various immune cells
... Hi all. Thank you so much in advance. I am curious whether there is an existing database that provides both transcriptome and methylome of various immune cells. I was able to find a paper, "Genetic Drivers of epigenetic and transcriptional variation in human immune cells', published in CELL, 201 ...
dataset immune cell transcriptome methylome written 5 months ago by Jung-ho Kong0
0
votes
1
answer
274
views
1
answer
Mouse immune cell database
... Hello. Thank you so much in advance. I am curious if expression database (RNA seq or microarray) for immune cells exist. Also, is there a database exclusively for mouse? Thank you so much. ...
immune cell microarray rna-seq written 8 months ago by Jung-ho Kong0 • updated 8 months ago by ATpoint35k
0
votes
0
answers
189
views
0
answers
Edge weights on network propagation by mutation location
... Hello everyone, I am looking for tools for network propagation. Here is the point. I want to put edge weights by mutation's location in a protein. Are there tools setting edge weights by locations of mutations? Thank you so much in advance. ...
edge weight network propagation mutation written 10 months ago by Jung-ho Kong0
0
votes
0
answers
520
views
0
answers
analysis of kaplan-meier log-rank survival test
... HI. Thank you so much in advance. I'm trying to conduct survival analysis by using data deposited in the GEO(Gene Expression Omnibus) repository. One of the data I downloaded contained patient's survival months as well as whether patient's survival status was censored or uncensored. Is it ok to ...
0
votes
1
answer
787
views
1
answers
Comment: C: Question: removing germline polymorphism for mouse sequencing data
... Variants are in VCF format. Would I have to convert the above data to VCF as well and would there be a tool to do so? ...
written 2.3 years ago by Jung-ho Kong0
0
votes
1
answer
787
views
1
answers
Comment: C: Question: removing germline polymorphism for mouse sequencing data
... Thank you very much Kevin! Just one more thing, could you please tell me in detail how to use dbSNP to filter out polymorphisms? I'm new to this field and trying to learn. Thank you so much! ...
written 2.3 years ago by Jung-ho Kong0
1
vote
1
answer
787
views
1
answer
Question: removing germline polymorphism for mouse sequencing data
... Thank you so much in advance. My question is how can I use data provided from dbSNP to remove germline polymorphism for mouse? I used mm9 mouse reference genome to map variants. Do dbSNP provide germline polymorphism for mm9 as well, or would I have to change my mouse reference genome to mm10? Thank ...
germline polymorphism reference sequencing written 2.3 years ago by Jung-ho Kong0 • updated 2.3 years ago by Kevin Blighe60k
1
vote
0
answers
598
views
0
answers
mouse exome sequencing : disease gene prioritization?
... Hi Thank you so much in advance. I was just wondering if there are any research articles on using mouse exome sequencing data to identify human disease-associated genes. Since human and mouse share many common phenotype and genotype characteristics, it seemed reasonable for me that there must be so ...
genome gene prioritization mouse model organism written 2.6 years ago by Jung-ho Kong0 • updated 2.5 years ago by Biostar ♦♦ 20
1
vote
1
answer
1.1k
views
1
answer
Bioinformatic tools for identifying proteins with certain amino acid sequence motif
... Hi Thank you so much in advance. I hope to know if there is any tool that identifies proteins that contain certain amino acid sequence. There is a list of 90 proteins and what I hope to find out is that if the proteins in the list contain amino acid sequence of 'KFERQ'. Previously I had download ...
sequence written 2.7 years ago by Jung-ho Kong0 • updated 2.7 years ago by Jean-Karim Heriche22k
10
votes
1
answer
1.3k
views
1
answer
No ensembl ID for gene ID
... I'm trying to convert gene IDs to ensemble ID using files downloaded from biomart. It seems that some protein-coding genes does not have ensembl ID, but its synonym have ensemble ID available. For instance, for 'MLL2', no ensemble ID is available, but synonym of 'MLL2', which is 'KMT2D', does have ...
gene ensembl written 2.7 years ago by Jung-ho Kong0 • updated 2.7 years ago by Devon Ryan95k

Latest awards to Jung-ho Kong

Popular Question 5 months ago, created a question with more than 1,000 views. For Bioinformatic tools for identifying proteins with certain amino acid sequence motif
Popular Question 18 months ago, created a question with more than 1,000 views. For No ensembl ID for gene ID

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1224 users visited in the last hour