User: arunsaikirans

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Posts by arunsaikirans

<prev • 18 results • page 1 of 2 • next >
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AutoDock needs the extension of the docking parameter file to be ".dpf"?
... Hey all AutoDock needs the extension of the docking parameter file to be ".dpf". This occurs for some molecules during docking,but the docking parameter file is already in .dpf format? Did someone solve this? Kiran ...
autodock autogrid docking written 7 days ago by arunsaikirans0 • updated 5 days ago by Biostar ♦♦ 20
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Comment: C: Qiime file for Krona pie chart?
... I have finished qiime analysis,but I want to know what output file generated by qiime to provide as an input in kraken. ...
written 18 months ago by arunsaikirans0
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Comment: C: Qiime file for Krona pie chart?
... Hi Vijay, I have installed Krona and Kraken what is the input file for kraken and krona?? ...
written 18 months ago by arunsaikirans0
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Comment: C: Making a taxonomic plot for .biom file
... Hi Vijay, I have made pie chart using qiime but I am trying to create with Krona could you help me. I have installed Krona and kraken,but have no idea how to proceed,i have downloaded minikraken database(4gb),need help. ...
written 18 months ago by arunsaikirans0
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Comment: C: Qiime file for Krona pie chart?
... Hello badribio, Could you please explain how to create kraken output,what is the command to be used?? ...
written 18 months ago by arunsaikirans0
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What is the input file for kraken to create krona plots?
... Hey guys, I am trying to create krona plots for metagenomic data,for that the output from kraken is used.I have now installed kraken and krona.But I have no idea how to start working. PLS tell me about the databases and minikraken.I have heard that minikraken is sufficient. Could someone help me wi ...
krona kraken qiime written 18 months ago by arunsaikirans0 • updated 18 months ago by Sej Modha4.2k
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Comment: C: Plots in R using phyloseq
... Should create plots like this need help. ...
written 18 months ago by arunsaikirans0
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Answer: A: Plots in R using phyloseq
... https://ibb.co/dz4F7G ...
written 18 months ago by arunsaikirans0
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Plots in R using phyloseq
... Hi all, I am trying to create barplots for my metagenomic data via R and phyloseq, I should create plots of a single specified genus or species for all my samples. Could any one explain how to create this using R code??? Thanks Kiran ![plot image][1] [1]: https://ibb.co/dz4F7G ...
R phyloseq written 18 months ago by arunsaikirans0
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Comment: C: Names are not identical in mapping file and the otu file.
... I am using R phyloseq package.Here qsd is the mapping file (mappingfile.tsv)which I have created while running Qiime and mp0 is the (otu_table.biom) file.Should I change the sample names in the biom file?? ...
written 19 months ago by arunsaikirans0

Latest awards to arunsaikirans

Popular Question 18 months ago, created a question with more than 1,000 views. For What is the input file for kraken to create krona plots?
Popular Question 18 months ago, created a question with more than 1,000 views. For Making a taxonomic plot for .biom file
Popular Question 18 months ago, created a question with more than 1,000 views. For Plots in R using phyloseq

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