User: arunsaikirans

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Posts by arunsaikirans

<prev • 17 results • page 1 of 2 • next >
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Comment: C: Qiime file for Krona pie chart?
... I have finished qiime analysis,but I want to know what output file generated by qiime to provide as an input in kraken. ...
written 14 months ago by arunsaikirans0
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Comment: C: Qiime file for Krona pie chart?
... Hi Vijay, I have installed Krona and Kraken what is the input file for kraken and krona?? ...
written 14 months ago by arunsaikirans0
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Comment: C: Making a taxonomic plot for .biom file
... Hi Vijay, I have made pie chart using qiime but I am trying to create with Krona could you help me. I have installed Krona and kraken,but have no idea how to proceed,i have downloaded minikraken database(4gb),need help. ...
written 14 months ago by arunsaikirans0
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Comment: C: Qiime file for Krona pie chart?
... Hello badribio, Could you please explain how to create kraken output,what is the command to be used?? ...
written 14 months ago by arunsaikirans0
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What is the input file for kraken to create krona plots?
... Hey guys, I am trying to create krona plots for metagenomic data,for that the output from kraken is used.I have now installed kraken and krona.But I have no idea how to start working. PLS tell me about the databases and minikraken.I have heard that minikraken is sufficient. Could someone help me wi ...
krona kraken qiime written 14 months ago by arunsaikirans0 • updated 14 months ago by Sej Modha4.1k
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Comment: C: Plots in R using phyloseq
... Should create plots like this need help. ...
written 14 months ago by arunsaikirans0
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Answer: A: Plots in R using phyloseq
... https://ibb.co/dz4F7G ...
written 14 months ago by arunsaikirans0
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Plots in R using phyloseq
... Hi all, I am trying to create barplots for my metagenomic data via R and phyloseq, I should create plots of a single specified genus or species for all my samples. Could any one explain how to create this using R code??? Thanks Kiran ![plot image][1] [1]: https://ibb.co/dz4F7G ...
R phyloseq written 14 months ago by arunsaikirans0
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Comment: C: Names are not identical in mapping file and the otu file.
... I am using R phyloseq package.Here qsd is the mapping file (mappingfile.tsv)which I have created while running Qiime and mp0 is the (otu_table.biom) file.Should I change the sample names in the biom file?? ...
written 15 months ago by arunsaikirans0
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Names are not identical in mapping file and the otu file.
... Hi all, I am trying to create barplots for my files from qiime. 1.Biom file 2.mapping file I always get an error while merging the biom and mapping file. **Error in validObject(.Object) : invalid class “phyloseq” object: Component sample names do not match. Try sample_names()** Here qsd---mapping ...
R phyloseq qiime written 15 months ago by arunsaikirans0 • updated 15 months ago by Hussain Ather910

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