User: arunsaikirans

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Posts by arunsaikirans

<prev • 18 results • page 2 of 2 • next >
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Names are not identical in mapping file and the otu file.
... Hi all, I am trying to create barplots for my files from qiime. 1.Biom file 2.mapping file I always get an error while merging the biom and mapping file. **Error in validObject(.Object) : invalid class “phyloseq” object: Component sample names do not match. Try sample_names()** Here qsd---mapping ...
R phyloseq qiime written 2.3 years ago by arunsaikirans0 • updated 2.3 years ago by Hussain Ather940
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Making a taxonomic plot for .biom file
... HI all, I have made the heat maps for the biom file with respect to different levels of classification using QIIME.Now I am trying to create a taxonomic chart,more like a pie chart. Please suggest some of the tools that can be used to create the above chart. Kiran. ...
taxonomic plot ngs next-gen .biom qiime written 2.5 years ago by arunsaikirans0 • updated 2.5 years ago by lakhujanivijay4.8k
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Answer: A: Need help with heatmaps in QIIME
... [heatmap][1] [1]: https://ibb.co/ncOCGv ...
written 2.6 years ago by arunsaikirans0
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Need help with heatmaps in QIIME
... Hi all I am trying to create a heat map in qiime for a sample. When I use the command make_otu_heatmap.py -i otu_table.biom -m S1.txt -t rep_set.tre -o h1 a heatmap is generated but there is no differentiation. Then I used make_otu_heatmap.py -i otu_table.biom -m S1.txt -t rep_set.tre -c Desc ...
heatmaps qiime written 2.6 years ago by arunsaikirans0
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Comment: C: Heat map qiime
... [HEATMAP][1] [1]: https://ibb.co/ncOCGv ...
written 2.6 years ago by arunsaikirans0
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Answer: A: Heat map qiime
... https://ibb.co/nOaEUF [enter link description here][1] [1]: https://ibb.co/nOaEUF ...
written 2.6 years ago by arunsaikirans0
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Comment: C: Heat map qiime
... make_otu_heatmap.py !heatmap][1] [1]: http://home/saikiran/new%20ngs/heatmap.pdf ...
written 2.6 years ago by arunsaikirans0
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Heat map qiime
... I am new to qiime.... To observe the result, i have taken only a forward read and reverse read and proceeded,while making heat map with the biom file, there is no colour differentiation among the organisms and the otu's appear crowded and not clear.PLS HELP ME ...
sequencing otu qiime biom heatmap written 2.6 years ago by arunsaikirans0

Latest awards to arunsaikirans

Popular Question 2.2 years ago, created a question with more than 1,000 views. For What is the input file for kraken to create krona plots?
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Making a taxonomic plot for .biom file
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Plots in R using phyloseq

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