User: drikaul

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drikaul10
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3 weeks ago
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1 year, 10 months ago
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d******@umich.edu

Posts by drikaul

<prev • 5 results • page 1 of 1 • next >
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Comment: C: which tool is used for separating forward and reverse from paired end fastq
... But this would not work on local files that haven't been downloaded from SRA, correct? ...
written 4 weeks ago by drikaul10
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Comment: C: Interproscan sequence classification
... Thanks for your response! Yes, it's a metaproteome sample, and I'm trying to run both blastp and interproscan to see if there is a difference in the results. But I'll take your advice and stick to protein domain annotations from interproscan, instead of trying to retrieve taxonomic info. ...
written 6 weeks ago by drikaul10
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Interproscan sequence classification
... Hi all, I have InterProScan results for a bunch of protein queries, and I see comprehensive functional annotation and description for them. I was wondering if it's possible to get putative taxonomic classification for them as well, **is interproscan designed to do that**? Is there a way to retriev ...
interproscan taxonomy taxonomic classification written 6 weeks ago by drikaul10
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Comment: C: Busco result interpretation
... I think CheckM is primarily for bacterial and archaeal genomes ...
written 16 months ago by drikaul10
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Comment: A: Is OrthoVenn server is down?? Comparative analysis of orthologous protein groups
... Hi, I'm getting a similar error where something seems to have gone wrong with disk space. Has anyone seen this error before? -------------------------------------------------------------------------------------------------- Warning: mkdir(): No space left on device in /var/www/OrthoVenn/orthovenn_ ...
written 22 months ago by drikaul10

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