User: kevin.l.yang

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Posts by kevin.l.yang

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Sequence kernel SVM kebabs software memory error
... I am trying to create a support vector regression model that assigns a score to a DNA sequence. I am using the kebabs software from bioconductor (https://bioconductor.org/packages/release/bioc/html/kebabs.html). Here is my code: library(kebabs) library(Biostrings) fastas = rea ...
R svm written 13 days ago by kevin.l.yang0 • updated 13 days ago by zx87547.3k
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Is Cufflinks2's normalization method reliable for differential expression analysis?
... I am using both DESeq2 and Cufflinks2 for differential expression analysis for some mouse RNAseq data. I was reading this guide (http://chagall.med.cornell.edu/RNASEQcourse/Intro2RNAseq.pdf) for help. Page 49 of the guide says that RPKM/FPKM isn't suitable for differential expression analysis, since ...
rna-seq written 20 months ago by kevin.l.yang0 • updated 20 months ago by Kevin Blighe42k

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