User: Lilizine

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Lilizine0
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Posts by Lilizine

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Comment: C: web efetch Json out put which is not a real json
... I changed the following: search_url = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi? db=pubmed&mindate=2010/01/01&maxdate=2016/12/31&usehistory=y&retmode=xml" search_r = requests.post(search_url) search_data = search_r.xml() webenv = search_data["es ...
written 19 months ago by Lilizine0
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Comment: C: web efetch Json out put which is not a real json
... Already did this and it returns an error ...
written 19 months ago by Lilizine0
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web efetch Json out put which is not a real json
... Hi all`` I am using this code to download pubmed articles search_url = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi? db=pubmed&mindate=2010/01/01&maxdate=2016/12/31&usehistory=y&retmode=json" search_r = requests.post(search_url) search_data = search_r ...
python efetch json biopython pubmed written 19 months ago by Lilizine0 • updated 11 weeks ago by MatthewP80
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Comment: C: How to iterate esearch and efetch
... Sorry I am new in the forum :) ...
written 19 months ago by Lilizine0
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Nested loops write in xml
... Hi all I want to write the output for each tuple ( year, term) in an xml format This is what I have done: enteryears = range(2017, 2016, -1) termList=["unmet ","needs"] for year in years: for query in termList: xml_data=fetchByQuery(query,years) ...
python loop biopython efetch xml written 19 months ago by Lilizine0
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Comment: A: How to iterate esearch and efetch
... Thank you ! Now I want to write the output for each tuple ( year, term) in an xml format This is what I have done: enteryears = range(2017, 2016, -1) termList=["unmet ","needs""] for year in years: for query in termList: xml_data=fetchByQuery(query,years) if x ...
written 19 months ago by Lilizine0
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How to iterate esearch and efetch
... Hi all, I am new with Biopython :) def fetchByQuery(query,days): Entrez.email = "email" # must give NCBI an email address searchHandle=Entrez.esearch(db="pubmed", reldate =single_date, term=query, usehistory="y") searchResults=Entrez.read(searchHandle) searchHandle.close() ...
software error written 19 months ago by Lilizine0

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