User: gb

gravatar for gb
gb1.9k
Reputation:
1,900
Status:
Trusted
Location:
Last seen:
39 minutes ago
Joined:
3 years, 2 months ago
Email:
m**************@gmail.com

Posts by gb

<prev • 355 results • page 1 of 36 • next >
0
votes
0
answers
44
views
0
answers
Comment: C: Correct number of detected variants by coverage
... Then it can be a solution the use a percentage. Maybe some others will post a different solution. ...
written 5 days ago by gb1.9k
0
votes
0
answers
44
views
0
answers
Comment: C: Correct number of detected variants by coverage
... Do you already use a kind of percentage threshold? So only use the variant if it occurs in 10% or 99% of the mapped reads? ...
written 5 days ago by gb1.9k
2
votes
1
answer
77
views
1
answers
Answer: A: what is the meaning of "coronavirus being converged"?
... I think "converged over time" in this case means that over time the coronaviruses in Europe and Asia "came together" and show a more similar mutational profile compared to North America. Maybe someone else can elaborate this on a epidemiologic aspect. Why this happens. Is the immunsystem of people ...
written 6 days ago by gb1.9k
0
votes
0
answers
120
views
0
answers
Comment: C: BLAST search with multile fasta sequences and with a single output
... Ah thanks for the clarification, now people can understand where the question is coming from. It is true that blasting can be computationally intensive this mostly has to do with the reference database. If the reference is small it can go pretty fast. A question that comes to my mind is that what ar ...
written 5 weeks ago by gb1.9k
0
votes
0
answers
120
views
0
answers
Comment: C: BLAST search with multile fasta sequences and with a single output
... Did you already tried something? Because this is already how blast works... Or I don't understand the question of course. EDIT: Maybe show the command that you used, mostly it easier for the community here to give guidance based on that command. ...
written 5 weeks ago by gb1.9k
0
votes
1
answer
98
views
1
answers
Comment: C: viral amplicons single-end assembly
... You sure there is no reference available? If there is, BWA or bowtie. ...
written 5 weeks ago by gb1.9k
0
votes
1
answer
1.7k
views
1
answers
Comment: C: How to specify Cut-off/parameters of sequence identity > 70% and query length >
... You sure you use blastn? Also don't forget the dash. You can double check the parameter with the ```blastn -help``` command. EDIT: The error is correct. tblastn does not have such option. https://www.ncbi.nlm.nih.gov/books/NBK279684/ ...
written 6 weeks ago by gb1.9k
2
votes
2
answers
184
views
2
answers
Answer: C: Great Python tool(s) for simulating fake/dummy VCF files?
... Maybe it is better to simulate fastq files, and create VCF files yourself. This may give a bit more control. https://www.biostars.org/p/324538/ ...
written 7 weeks ago by gb1.9k
1
vote
1
answer
186
views
1
answers
Answer: C: mpileup error : Note: none of --samples-file, --ploidy or --ploidy-file given, a
... With not much more context the answer now is giving ```--ploidy 1``` to your command. ...
written 3 months ago by gb1.9k
1
vote
0
answers
178
views
0
answers
Comment: C: Galaxy - bigWigToBedGraph: command not found
... Most of the time this "issue" is related to conda if you want a quick tip. So conda is not installed or configured so it did not installed bigWigToBedGraph. But like it is already mentioned, it is better to ask this at the galaxy help forum. ...
written 3 months ago by gb1.9k

Latest awards to gb

Popular Question 5 days ago, created a question with more than 1,000 views. For SILVA taxonomy ranks
Popular Question 5 months ago, created a question with more than 1,000 views. For how to makeblastdb with taxon id's
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: How much I must feel useless?
Commentator 8 months ago, created a comment with at least 3 up-votes. For C: How much I must feel useless?
Appreciated 9 months ago, created a post with more than 5 votes. For A: Removing Duplicates before aligning
Scholar 9 months ago, created an answer that has been accepted. For A: Clustering of metabarcoding reads from many environmental samples
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Removing Duplicates before aligning
Scholar 9 months ago, created an answer that has been accepted. For A: Clustering of metabarcoding reads from many environmental samples
Scholar 10 months ago, created an answer that has been accepted. For A: Clustering of metabarcoding reads from many environmental samples
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Removing Duplicates before aligning
Scholar 10 months ago, created an answer that has been accepted. For A: Clustering of metabarcoding reads from many environmental samples
Scholar 10 months ago, created an answer that has been accepted. For A: Clustering of metabarcoding reads from many environmental samples
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Removing Duplicates before aligning
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Removing Duplicates before aligning
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Removing Duplicates before aligning
Commentator 13 months ago, created a comment with at least 3 up-votes. For C: How much I must feel useless?
Guru 13 months ago, received more than 100 upvotes.
Scholar 13 months ago, created an answer that has been accepted. For A: Clustering of metabarcoding reads from many environmental samples
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Removing Duplicates before aligning
Scholar 13 months ago, created an answer that has been accepted. For A: Clustering of metabarcoding reads from many environmental samples
Supporter 13 months ago, voted at least 25 times.
Scholar 19 months ago, created an answer that has been accepted. For A: Clustering of metabarcoding reads from many environmental samples
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Removing Duplicates before aligning
Popular Question 20 months ago, created a question with more than 1,000 views. For how to makeblastdb with taxon id's
Scholar 22 months ago, created an answer that has been accepted. For A: Clustering of metabarcoding reads from many environmental samples

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1899 users visited in the last hour