User: g.sathish.k

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Posts by g.sathish.k

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Comment: C: Genes around open regions
... Thanks Alex that really helped :) ...
written 9 days ago by g.sathish.k0
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Comment: C: Genes around open regions
... I want to use the release_19 of gencode so i made changes to the above code and was able to successfully generate genes.bed file. But, I couldn't get the "bedmap --echo --echo-map-id-uniq --range 25000 open-regions.bed genes.bed > answer.25kb.bed" code to work. It creates the output file but the ...
written 10 days ago by g.sathish.k0
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Comment: C: Genes around open regions
... Thank you Alex, I really appreciate your help. ...
written 10 days ago by g.sathish.k0
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Comment: C: Genes around open regions
... Thanks Jared, I appreciate it. ...
written 11 days ago by g.sathish.k0
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Genes around open regions
... Hello Everyone! I am new here and new to field of genomics and informatics. Recently we generated ATAC-seq data of normal and cancer cells.. The data shows open regions in cancer cells compared to normal cells. I would like to know if there is a program out there to generate a list of genes that a ...
gene genes open atac-seq written 11 days ago by g.sathish.k0 • updated 11 days ago by Alex Reynolds20k

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