User: aredash

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aredash0
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Posts by aredash

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Comment: C: One of two mates listed as "properly paired" in Bowtie2
... Thanks Devon. I also removed the rna-seq tag. ...
written 5 months ago by aredash0
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One of two mates listed as "properly paired" in Bowtie2
... I have been running bowtie2 on paired end sequences and noticed something funny when I tried to filter out reads that weren't properly paired. I seemed to be getting orphan reads left behind after filtering with `samtools view -f 2`. After digging around, I noticed that after the initial alignment, ...
alignment written 5 months ago by aredash0

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