User: Dm Church

gravatar for Dm Church
Dm Church30
Reputation:
30
Status:
New User
Location:
United States
Website:
http://about.me/dmchurch
Last seen:
7 years, 1 month ago
Joined:
7 years, 2 months ago
Email:
4***@biostars.org

Posts by Dm Church

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Building A Splice Junction Library For Aligning Mrna Against The Rat Genome: Chr
... In many cases, the chr*_random sequences do contain annotation. This is even true in human and mouse (two well curated, high quality assemblies). These are just sequences that can't be ordered and oriented on the assembly, but they may still contain features. ...
written 7.2 years ago by Dm Church30
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Comment: C: Is There A Human Annotation Resource Using The Sequence Ontology (So) ?
... Sorry for the misread on that. ...
written 7.2 years ago by Dm Church30
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Answer: A: General Question: Human Cnv/Structural Variants Algorithms Using Next-Gen Data C
... Calling structural variants is indeed challenging, and software is being developed and tweaked all of the time. This is why dbVar (http://www.ncbi.nlm.nih.gov/dbvar) tries to capture the experimental evidence (as best as it can) that went into the variant calls. This repository also allows for colle ...
written 7.2 years ago by Dm Church30
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Answer: A: Is There A Human Annotation Resource Using The Sequence Ontology (So) ?
... You can get a file mapping GO terms to Gene IDs from Entrez Gene: ftp://ftp.ncbi.nih.gov/gene/DATA/ gene2go.gz ...
written 7.2 years ago by Dm Church30
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Comment: C: Which Genomic Coordinates Does Cen Map To?
... OK- we have the code to do this- we use it to support pages like this:http://www.ncbi.nlm.nih.gov/genome/tools/gdp I'll see if we can get this set up as a public service/web site that folks can use. ...
written 7.2 years ago by Dm Church30
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Answer: A: Which Genomic Coordinates Does Cen Map To?
... Typically cen stands for centromere. So 6p21.1-cen is band 6p21.1 to the centromere. The GRC (http://genomereference.org) attempts to model centromere lengths (using Ns that approximate the length of the centromere) in the assembly, so there should be a conversion for this- although I'm not entirely ...
written 7.2 years ago by Dm Church30

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