User: mollitz
mollitz • 70
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Posts by mollitz
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... To underline what @Carlo Yague pointed out. This answer does *not* represent what most people refer to the term "insert size". See here:
https://www.biostars.org/p/95803/
This forum lacks a down-vote button (similar to stackexchange) ...
written 7 months ago by
mollitz • 70
1
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3
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3
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... Also there is a published reference annotation data set (refTSS) here:
https://www.sciencedirect.com/science/article/pii/S0022283619302530
http://reftss.clst.riken.jp/ ...
written 15 months ago by
mollitz • 70
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... Hey Jon,
did you achieve your goal and want to share your experience with us? ...
written 19 months ago by
mollitz • 70
0
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... "HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome)."
- HISAT2 website (https://ccb.jhu.edu/software/hisat2/index.shtml) ...
written 2.2 years ago by
mollitz • 70
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... The Hammel lab provides GTF annotations:
> GTF files for gene annotation can be obtained from UCSC RefSeq,
> Ensembl, iGenomes or other annotation databases. GTF files for TE
> annotations are customly generated from UCSC RepeatMasker or other
> annotation database. They contain two cu ...
written 2.3 years ago by
mollitz • 70
6
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1
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... Hey,
is there a way to tell which of the transcripts for a given gene corresponds to the canonical isoform in the Gencode dataset?
I couldn't find such information anywhere.
Best ...
written 3.2 years ago by
mollitz • 70
• updated
3.2 years ago by
Emily_Ensembl ♦ 21k
2
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1
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1.3k
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... Hey,
I got a bit lost while trying to access gene sequences in the GRCH37. I downloaded CCDS coordinates (I tried datasets from Enseml an NCBI:
ftp://ftp.ensembl.org/pub/release-75/fasta/homo_sapiens/cds/
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/ccdsGene.txt.gz
along with the provid ...
written 3.3 years ago by
mollitz • 70
• updated
3.3 years ago by
Satyajeet Khare • 1.6k
Latest awards to mollitz
Popular Question
6 months ago,
created a question with more than 1,000 views.
For Tell Canonical Isoform/Trancsript in gencode
Appreciated
8 months ago,
created a post with more than 5 votes.
For A: Transposable Elements positions in genome (GTF file)
Popular Question
13 months ago,
created a question with more than 1,000 views.
For [hg19] Reading genes with CCDS
Teacher
2.2 years ago,
created an answer with at least 3 up-votes.
For A: Transposable Elements positions in genome (GTF file)
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