User: pup-ccmb

gravatar for pup-ccmb
pup-ccmb0
Reputation:
0
Status:
New User
Last seen:
3 months ago
Joined:
1 year, 5 months ago
Email:
r***************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by pup-ccmb

<prev • 13 results • page 1 of 2 • next >
0
votes
0
answers
170
views
0
answers
Comment: C: Rawcopy copy number analysis
... Is this problem resolved ? ...
written 3 months ago by pup-ccmb0
0
votes
1
answer
312
views
1
answers
Comment: C: How to find CNV or CN state information from rawcopy output ?
... Can you please share your email. I will share you the details including examples. Thanks ! ...
written 3 months ago by pup-ccmb0
0
votes
1
answer
312
views
1
answers
Comment: C: How to find CNV or CN state information from rawcopy output ?
... Yes, log ratios are mentioned but the output file doesn't has that information. In output, it generates allelic imbalance frequencies but no information for log2ratio/logratio. How it is possible to convert allelic imbalance frequencies to logratios .. ? This is my question. ...
written 3 months ago by pup-ccmb0
0
votes
1
answer
312
views
1
answers
Comment: C: How to find CNV or CN state information from rawcopy output ?
... I have used rawcopy R-package to analyze .CEL files for CNV analysis. Here, outputs generated which have allelic imbalance frequencies instead of CN state or log2ratio. How it is possible to convert allelic imbalance frequencies to CNState or log2ratio ? This is my doubt, Sir. ...
written 3 months ago by pup-ccmb0
0
votes
1
answer
312
views
1
answers
Comment: C: How to find CNV or CN state information from rawcopy output ?
... Cytoscan HD. In rawcopy output while predicting CNV, I got Allelic Imbalance frequency scores. Is there any method to convert this scores to log2ratio or CN state ? ...
written 4 months ago by pup-ccmb0
2
votes
1
answer
312
views
1
answer
How to find CNV or CN state information from rawcopy output ?
... I have to do CNV analysis and find the CNVs present in .CEL file. I used rawcopy for this purpose which is r package widely used for CNV analysis as like CHAS. But, the output files contain the information of Allelic.Imbalance. How will I find CN state or no. of copies information ? Is there any go ...
cnv next-gen microarray snp sequencing written 5 months ago by pup-ccmb0 • updated 3 months ago by lynn_redman10
0
votes
0
answers
280
views
0
answers
Comment: C: Populating values of each parameter of dataframe1 to another dataframe2 under sa
... Yes, you are right !. Here, I have shared a dummy example which actually relates to NGS data. ...
written 11 months ago by pup-ccmb0
1
vote
0
answers
280
views
0
answers
Populating values of each parameter of dataframe1 to another dataframe2 under same parameter field names
... How to populate parameters values present in rows of one dataframe(df1) to dataframe(df2) under same parameter field in R? Dataframe1 contain: df1 Col1 Col2 Col3 Col4 Col5 A=5 C=1 E=5 F=4 G=2 --Row1 A=6 B=3 D=6 E=4 F=4 --Row2 B=2 C=3 D=3 ...
gene R next-gen alignment genome written 11 months ago by pup-ccmb0
0
votes
1
answer
265
views
1
answers
Comment: C: Break the repeated col. values into same col vertically displaying the output in
... Can you pls update your script once ? ...
written 12 months ago by pup-ccmb0
0
votes
1
answer
265
views
1
answers
Comment: C: Break the repeated col. values into same col vertically displaying the output in
... Thanks Ryan, I'll try this also. But, assume if we have "n" nu of cols then how to use .. ? I have shown only 5 cols, in some case there will be more than 40/50 cols and this is dynamic.. Also, can u pls say what is "c" and "d" ? Thanks .. ...
written 12 months ago by pup-ccmb0

Latest awards to pup-ccmb

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1101 users visited in the last hour