User: sofie_carolina

Reputation:
20
Status:
New User
Location:
Hyderabad
Last seen:
4 months, 3 weeks ago
Joined:
2 years, 12 months ago
Email:
r***************@gmail.com

Posts by sofie_carolina

<prev • 44 results • page 1 of 5 • next >
0
votes
0
answers
286
views
0
answers
Comment: C: How to host/run Galaxyserver-NGS in AWS IP or in a webserver IP
... Can you please say how to do it ? Have you hosted galaxy globally on internet ? After installing apache what we need to do ? Is there anywhere manual or steps mentioned ? Please share ...
written 5 months ago by sofie_carolina20
0
votes
0
answers
286
views
0
answers
Comment: C: How to host/run Galaxyserver-NGS in AWS IP or in a webserver IP
... So you know the steps and have you done this before ? Can I host galaxy on public IP of AWS Instance ? Like http://ip:8080 ? ...
written 5 months ago by sofie_carolina20
0
votes
0
answers
286
views
0
answers
Comment: C: How to host/run Galaxyserver-NGS in AWS IP or in a webserver IP
... Permission restrictions. Unable to ask. Anything alternative please ? ...
written 5 months ago by sofie_carolina20
1
vote
0
answers
286
views
0
answers
How to host/run Galaxyserver-NGS in AWS IP or in a webserver IP
... Hii All, I wish all to be good and safe in this pandemic time,and wish things to be all-right soon :) I would be thankful if anyone can help me to address my issues. I was asked to deploy GalaxyServer in AWS (CetnOS) and I have installed and Galaxy is running locally successful. But, galaxy is ru ...
genome ngs galaxy snp sequencing written 5 months ago by sofie_carolina20
0
votes
0
answers
297
views
0
answers
Compare two cols of one file to another file of same cols and fetch the matches
... I have file1 of 6.5lakh rows with two cols, "Chr" and "Pos". I want to compare this file with dbsnp (file2) datadump and match with with Chr and Pos col present in dbSNP dump. Once matched, respective rsid's to be fetched. I tried using Python Panda's but my process is getting killed. When it tried ...
genome gene next-gen snp python written 16 months ago by sofie_carolina20
0
votes
0
answers
302
views
0
answers
(Closed) Basic difference between haplotype variant callers
... What is the basic difference between variant callers (haplotype calling). We have callers like, GATK, Freebayes, Vardict, Platypus, etc. Each callers have their own sensitivity to call variants as per to mapped reads. What more basic difference they have ? For fetching all the variants (possibly) wh ...
genome gatk next-gen snp sequencing written 16 months ago by sofie_carolina20
0
votes
1
answer
2.3k
views
1
answers
Comment: C: PRSice polygenic score with only controls
... Hi, Even I am also getting same error. But, after giving phenotype file, this is the error now, Error in family$linkfun(mustart) : Argument mu must be a nonempty numeric vector Calls: summary ... glm -> eval -> eval -> glm.fit -> -> .Call Execution halted ...
written 17 months ago by sofie_carolina20
1
vote
0
answers
952
views
0
answers
Polygenic Risk Score analysis using PRSice
... I am doing Polygenic Risk Score analysis for microarray data with a specific trait. I am facing problem to understand the outputs generated by PRSice application (v1.25) and looking forward for any guidance or help for the same. Questions are: 1. How to set individual PRS quantile (specific traits ...
genome gwas next-gen snp sequencing written 17 months ago by sofie_carolina20
0
votes
1
answer
1.7k
views
1
answers
Comment: C: What is REF and ALT ? Does all variations are mutations ?
... Thanks for your kind consideration. I will perform the analysis as you have suggested. My query was just to confirm what is difference between variation and mutation. I too also have some more doubts :), If you are kind enough I can ask. One more doubt I have. Do we need to use mutation thresholds ...
written 17 months ago by sofie_carolina20
0
votes
0
answers
1.2k
views
0
answers
Comment: C: How to download SNPedia database or data dump
... Yes, I have seen that and also downloaded but max 500 hits are possible I guess ? Also, I am not getting magnitude information in the downloaded cols of SNPedia. ...
written 17 months ago by sofie_carolina20

Latest awards to sofie_carolina

Popular Question 16 months ago, created a question with more than 1,000 views. For What is REF and ALT ? Does all variations are mutations ?
Popular Question 16 months ago, created a question with more than 1,000 views. For How can I convert .ped file to bed+bim+fam file using plink 1.9?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 758 users visited in the last hour