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0
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0
replies
471
views
identify the miRNA response elements (mres)
R
16 months ago by Sam ▴ 150
3
votes
2
replies
593
views
bash/awk code to comapre tables
bash awk
updated 16 months ago by 8.4k • written 16 months ago by ▴ 150
1
vote
1
reply
1.1k
views
interaction analysis of smallRNA-seq and RNA-seq data
srnaRNA-se RNA-Seq
updated 3.2 years ago by 20 • written 6.0 years ago by ▴ 150
4
votes
4
replies
5.5k
views
what is the easiest/fastest way to convert from BAM to GTF
Bam GTF
updated 4.4 years ago by ▴ 10 • written 5.6 years ago by ▴ 150
0
votes
1
reply
3.6k
views
inbreeding coefficient (F) with vcftools
vcftools
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 150
3
votes
2
replies
1.2k
views
vcflib-popstats to calculate FIS of a subpopulation
vcflib popstats
updated 4.7 years ago by 12k • written 4.8 years ago by ▴ 150
5
votes
6
replies
1.4k
views
print non match to list lines of GTF file
bash grep awk
4.9 years ago by Sam ▴ 150
5
votes
6
replies
1.4k
views
6 follow
compare two columns of two files
awk bash
updated 5.0 years ago by ▴ 750 • written 5.0 years ago by ▴ 150
4
votes
7
replies
1.2k
views
unstranded RNA-seq lib for ncRNA prediction
lncRNA RNA-Seq
5.2 years ago by Sam ▴ 150
1
vote
3
replies
1.6k
views
featurecounts flags for lncRNA and mRNA co-expression
featurecounts co-expression
5.2 years ago by Sam ▴ 150
2
votes
1
reply
1.3k
views
co-expression output format(rcorr.adjust)
R co-expression
updated 5.2 years ago by 11k • written 5.2 years ago by ▴ 150
1
vote
5
replies
3.1k
views
WGCNA and corAndPvalue
WGCNA
5.2 years ago by Sam ▴ 150
0
votes
1
reply
940
views
genie3 for lncRNAs and mRNAs co-expression
Genie3 differential co-expression analysis
5.2 years ago by Sam ▴ 150
3
votes
2
replies
1.4k
views
filter gene expression matrix
gene-expression filter
updated 2.5 years ago by 43k • written 5.2 years ago by ▴ 150
5
votes
3
replies
3.1k
views
genie3 package Error in (function (classes, fdef, mtable)
R genie3
updated 5.2 years ago by 43k • written 5.2 years ago by ▴ 150
1
vote
3
replies
2.1k
views
add cut off lines to volcano plot
volcano plot
5.2 years ago by Sam ▴ 150
0
votes
1
reply
1.7k
views
Hisat2 output for stringtie
hisat2 stringtie
updated 5.4 years ago by 5.8k • written 5.4 years ago by ▴ 150
0
votes
3
replies
2.0k
views
non-integer numReads for differential expression analysis
non-integer numReads deseq2
5.5 years ago by Sam ▴ 150
10
votes
9
replies
1.7k
views
compare two file to retrieve common lines
bash awk
5.5 years ago by Sam ▴ 150
1
vote
5
replies
1.6k
views
cufflinks large bundles warning
cufflinks star
5.6 years ago by Sam ▴ 150
0
votes
6
replies
2.3k
views
plotting according p-value
plot p-value
5.6 years ago by Sam ▴ 150
3
votes
4
replies
1.3k
views
compare two columns in text files
awk cat
5.8 years ago by Sam ▴ 150
11
votes
9
replies
9.3k
views
add header with awk
awk
updated 5.8 years ago by ★ 1.1k • written 5.8 years ago by ▴ 150
7
votes
4
replies
1.5k
views
text file editing
awk bash
updated 5.8 years ago by 161k • written 5.8 years ago by ▴ 150
3
votes
9
replies
1.4k
views
appropriate script for DNA alignment
alignment DNA
5.8 years ago by Sam ▴ 150
0
votes
1
reply
1000
views
prepare a GFF file for MOCK fasta reference
genome gff sequence
5.8 years ago by Sam ▴ 150
2
votes
2
replies
1.4k
views
plant long non-coding RNA
RNA-seq lncRNA
updated 5.8 years ago by 6.4k • written 5.8 years ago by ▴ 150
3
votes
2
replies
850
views
listing library names
bash
updated 5.9 years ago by 141k • written 5.9 years ago by ▴ 150
23
votes
14
replies
3.4k
views
6 follow
changing the name of files
bash awk
updated 5.9 years ago by 8.4k • written 5.9 years ago by ▴ 150
0
votes
1
reply
914
views
retrieving long noncoding RNAs from PLANT RNA-seq
long non coding RNA
6.0 years ago by Sam ▴ 150
1
vote
0
replies
1.9k
views
GBS and TASSEL-GBS v2
GBS
6.0 years ago by Sam ▴ 150
3
votes
32
replies
3.4k
views
fastqc report for degradome reads
fastqc adaptor
6.0 years ago by Sam ▴ 150
4
votes
18
replies
3.2k
views
common sequence between multi fasta file
bash
6.1 years ago by Sam ▴ 150
1
vote
1
reply
1.2k
views
degradom sequence lenght
degradom
6.1 years ago by Sam ▴ 150
2
votes
4
replies
1.2k
views
perl path in mirdeep
perl env
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 150
1
vote
4
replies
1.2k
views
bash and awk code
awk bash
updated 6.3 years ago by 161k • written 6.3 years ago by ▴ 150
4
votes
3
replies
3.5k
views
Deseq2 count matrix
R rna-seq deseq2
updated 6.4 years ago by 20 • written 6.5 years ago by ▴ 150
0
votes
0
replies
1.4k
views
problem with bowtie alignment
bowtie smallRNA
updated 6.4 years ago by 20 • written 6.4 years ago by ▴ 150
4
votes
14
replies
5.5k
views
heatmap 2 error
heatmap
6.4 years ago by Sam ▴ 150
1
vote
21
replies
2.8k
views
fastq file data
RNA-seq fastq
updated 6.4 years ago by 100k • written 6.4 years ago by ▴ 150
4
votes
2
replies
1.0k
views
edit text file
bash awk
updated 6.5 years ago by 104k • written 6.5 years ago by ▴ 150
7
votes
5
replies
2.5k
views
miRNAs interaction networks analysis
miRNAs networks
updated 6.5 years ago by ★ 1.3k • written 6.5 years ago by ▴ 150
4
votes
18
replies
2.7k
views
unique list based on multiple column
awk sort
updated 6.5 years ago by ▴ 190 • written 6.5 years ago by ▴ 150
5
votes
11
replies
1.9k
views
compare two text file
awk bash
6.5 years ago by Sam ▴ 150
0
votes
0
replies
1.3k
views
categorization of miRNA and miRNA star
miRNA/miRNA*
6.5 years ago by Sam ▴ 150
11
votes
42
replies
4.1k
views
over presented kmer in fastq
fastqc RNA-Seq
6.5 years ago by Sam ▴ 150
23
votes
25
replies
2.8k
views
bash and awk code
bash awk terminal
16 months ago by Sam ▴ 150
1
vote
1
reply
980
views
RNA-seq experiments with TopHat2
RNA-Seq rna-seq alignment
6.6 years ago by Sam ▴ 150
2
votes
9
replies
2.1k
views
classification of small RNA-seq
RNA-Seq alignment
6.6 years ago by Sam ▴ 150
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