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questions
0
votes
0
replies
294
views
Finding a list of heritable traits using GCTA
complex
heritability
traits
GCTA
21 months ago by
samuelandjw
▴ 250
2
votes
1
reply
510
views
Should we include genotype as covariates when performing EWAS?
methylation
EWAS
DNA
updated 15 months ago by
Ram
43k • written 22 months ago by
samuelandjw
▴ 250
2
votes
1
reply
465
views
What are the general strategies in assessing new differentially methylation positions obtained from EWAS?
methylation
EWAS
DNA
updated 15 months ago by
Ram
43k • written 22 months ago by
samuelandjw
▴ 250
4
votes
1
reply
429
views
Is it okay to map reads from WES designed for GRCh37 to GRCh38?
exome
whole
sequencing
updated 22 months ago by
Pierre Lindenbaum
160k • written 22 months ago by
samuelandjw
▴ 250
0
votes
0
replies
383
views
How to get list of blood-expressed Fantom 5 enhancers?
fantom5
updated 22 months ago by
Ram
43k • written 22 months ago by
samuelandjw
▴ 250
1
vote
3
replies
711
views
How to access the NCBI Molecular QTL Browser?
QTL
updated 23 months ago by
GenoMax
140k • written 23 months ago by
samuelandjw
▴ 250
0
votes
0
replies
275
views
How to group EWAS traits like GWAS catalog does?
GWAS
EWAS
23 months ago by
samuelandjw
▴ 250
3
votes
1
reply
586
views
reference request: list of DNA methylation sites with consistent methylation levels across individuals in blood
methylation
DNA
updated 2.1 years ago by
Papyrus
★ 2.9k • written 2.1 years ago by
samuelandjw
▴ 250
1
vote
1
reply
518
views
EWAS: should DNA methylation level be the independent variable or dependent variable?
DNA
EWAS
methylation
updated 19 months ago by
Peter
• 0 • written 2.2 years ago by
samuelandjw
▴ 250
1
vote
1
reply
565
views
Should we trust genotypes called in simple tandem repeat regions?
sequencing
GATK
WGS
WES
updated 2.4 years ago by
Istvan Albert
100k • written 2.4 years ago by
samuelandjw
▴ 250
3
votes
0
replies
507
views
GATK site filtering: when should I use VQSR or hard filtering?
VQSR
GATK
2.4 years ago by
samuelandjw
▴ 250
0
votes
4
replies
1.4k
views
Best practice for running GATK VQSR on X chromosome
WGS
GATK
WES
2.4 years ago by
samuelandjw
▴ 250
11
votes
13
replies
2.4k
views
Why is WGS/WES depth of Y chromosome highly variable?
chromosome-Y
whole-genome-sequencing
updated 15 months ago by
Ram
43k • written 2.7 years ago by
samuelandjw
▴ 250
0
votes
0
replies
629
views
Convert spanning deletions called by GATK back to regular indels
GATK
sequencing
3.4 years ago by
samuelandjw
▴ 250
1
vote
2
replies
1.7k
views
meaning of Q_bias ADMIXTURE bootstrap
admixture
population
ancestry
updated 4.6 years ago by
icrojasb
• 0 • written 5.1 years ago by
samuelandjw
▴ 250
0
votes
1
reply
1000
views
refine population phased haplotypes by pedigree
phasing
genotype
pedigree
population
updated 4.7 years ago by
bmstudent
• 0 • written 5.1 years ago by
samuelandjw
▴ 250
4
votes
1
reply
1.8k
views
ADMIXTURE haploid mode does not converge
admixture
population
updated 15 months ago by
Ram
43k • written 5.1 years ago by
samuelandjw
▴ 250
17 results • Page
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