User: benoit.kunath

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Posts by benoit.kunath

<prev • 15 results • page 1 of 2 • next >
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Comment: C: grep/awk issue: can't extract sequences from a fasta file
... any example? Thanks ...
written 13 months ago by benoit.kunath10
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Comment: C: grep/awk issue: can't extract sequences from a fasta file
... I posted that already, it's in my previous post ...
written 13 months ago by benoit.kunath10
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Comment: A: grep/awk issue: can't extract sequences from a fasta file
... Hello, Thanks everyone for your help. I used notepad++ to change the line endings on both the ID and the fasta file. I've also made sure that my sequences were properly on one line each. Now, grep gives me a output, but some of the sequences are not complete. It looks like something like that: ...
written 13 months ago by benoit.kunath10
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grep/awk issue: can't extract sequences from a fasta file
... Hey everybody, I have an issue and I'm completely running out of idea here. I have a fasta file with mutiple sequences. I have an ID file with IDs corresponding to some of the sequences in the fasta file and I want to extract those sequences. Typical task, I've done it many times either using gre ...
fasta extraction sequence grep shell written 13 months ago by benoit.kunath10 • updated 8 months ago by Biostar ♦♦ 20
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Answer: A: BRIG: How to generate high resolution image
... Any idea? Thanks a lot, Ben ...
written 20 months ago by benoit.kunath10
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BRIG: How to generate high resolution image
... Hello everybody, Just wandering if there were some BRIG users around here. I can use it and generate quite interesting image, but now come the time to publish and it seems that the quality of the image generated by BRIG are pretty low. I couldn't find any option to improve that and/or generate and ...
alignment blast written 20 months ago by benoit.kunath10 • updated 20 months ago by jrj.healey13k
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Comment: C: Genome comparison: Visualization of insertion and deletion
... Yes that's the software I always find but it seems extremely complicated to learn... But thanks for the confirmation :) ...
written 21 months ago by benoit.kunath10
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Comment: C: BRIG: How to use a multi fasta file as query
... Yes it was like that. I guess that's the reason. Thanks a lot again for your help!! ...
written 21 months ago by benoit.kunath10
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Genome comparison: Visualization of insertion and deletion
... Hello, I try to generate figure to show difference between my microbial genomes (different strains). So far, I only found software that use reference genome and map the others genomes against that reference. However, that systems only allow me to see things that are missing in my strains or that ar ...
genome alignment written 21 months ago by benoit.kunath10
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Comment: C: BRIG: How to use a multi fasta file as query
... Hello. Since the only difference between the files was that one was a 1 line fasta file and the other was a multi fasta file where I deleted the intermediate header, I thought about something: I downloaded the genes from that 1 line fasta file, so I obtained a multi fasta file. I then deleted the t ...
written 21 months ago by benoit.kunath10

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