User: yaotianran

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yaotianran0
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Posts by yaotianran

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Comment: C: What do the fields DATA.9 - DATA.12 represent in an ab1 file ?
... DATA9------G DATA10----A DATA11----T DATA12----C ...
written 11 days ago by yaotianran0
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Comment: C: How to handle the 'Inf' and '-Inf' in cufflinks output when use clusterprofiler
... Thanks for the suggestion. I also consulted with my colleagues. Still no consensus on the solutions. But I read the article from the guy that invented the GSEA ( 2005-Gene set enrichment analysis - A knowledge-based approach for interpreting genome-wide expression profiles ). It seems the fold chan ...
written 13 months ago by yaotianran0
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How to handle the 'Inf' and '-Inf' in cufflinks output when use clusterprofiler gseGO
... Hi, I often use cufflinks and R/clusterProfiler to analyze RNA-seq data. In the cuffdiff output file gene_exp.diff, sometime lots of genes ( both significant yes and significant no ) have 'Inf' or '-Inf' as log2(fold_change). If I leave them there and use them as a input of gene set enrichment a ...
cufflinks gsea clusterprofiler gsego rna-seq written 13 months ago by yaotianran0 • updated 9 months ago by garcia.nacho0

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