User: biplab

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biplab20
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University of California, Davis
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Posts by biplab

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Answer: A: Alignment to ref genome
... You just need to specify the basename (part of the filename common to all of your index files) of index files. For example using genome.fa file as input in hisat2-buil we get these files as output(genome.1.ht2 genome.2.ht2 genome.3.ht2 genome.4.ht2 genome.5.ht2 genome.6.ht2 genome.7.ht2 genom ...
written 6 weeks ago by biplab20
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Comment: C: How can I extract annotation for genes from a GTF file that are more than 200 bp
... Thank you so much. Very good solution. ...
written 9 weeks ago by biplab20
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How can I extract annotation for genes from a GTF file that are more than 200 bp apart from neighboring genes?
... I am new in the field of computational biology. This questions might answered somewhere else but I could not find by searching. How can I extract annotation for genes from a GTF file that are more than 200 bp apart from neighboring genes? I was looking into bedtools for this but most functions in be ...
genome next-gen rna-seq written 9 weeks ago by biplab20 • updated 9 weeks ago by Alex Reynolds22k

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