User: asur

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asur0
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Answer: A: Aligning de-novo assembly to reference strain genome
... I actually had the same issue with nucmer. I would say Mauve is the best tool for multi-genome/assembly alignment, since it's fast and has it's own viewer. If you wanted an alignment in FASTA or MAF, mafft does a good job when there are chromosome length scaffolds, but if there are contigs spanning ...
written 20 months ago by asur0

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