User: sicat.paolo20

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Posts by sicat.paolo20

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Comment: C: Hisat2 multiple paired end reads
... Thanks for the help. I will look into this. ...
written 5 months ago by sicat.paolo200
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Comment: C: Hisat2 multiple paired end reads
... Thank you for the help. I'll be trying to do the latter. ...
written 5 months ago by sicat.paolo200
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Hisat2 multiple paired end reads
... For a single paired end read the script is hisat2 -x /path/to/hg19/indices -1 sample_1.fq.gz -2 sample_2.fq.gz | samtools view -Sbo sample.bam - Our queue is full so I'm not able to test this but is it possible to allign multiple paired end reads in one go and how would I go about it? ...
allignment rna-seq hisat2 written 5 months ago by sicat.paolo200 • updated 5 months ago by Vijay Lakhujani2.5k
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Cannot Install Reapr
... I cannot install Reapr. I receive this error message; In file included from /home/jpasicat/Downloads/Reapr_1.0.18/third_party/cmake/Utilities/KWIML/test/test_INT_CXX.cxx:14:0: /home/jpasicat/Downloads/Reapr_1.0.18/third_party/cmake/Utilities/KWIML/test/test_INT_format.h:94:1: warning: inval ...
installation ubuntu reapr tool written 8 months ago by sicat.paolo200 • updated 8 months ago by Philipp Bayer5.5k
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Answer: A: Evaluating the quality of draft genomes: checkm vs reapr
... Did you ever get to solve this issue? ...
written 8 months ago by sicat.paolo200
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Comment: C: Identifying Gene name
... at some point I lost my gene names and got tagged by something else. sequences still matched though. ...
written 8 months ago by sicat.paolo200
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Comment: C: Identifying Gene name
... at some point I lost my gene names and got tagged by something else. sequences still matched though. ...
written 8 months ago by sicat.paolo200
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Identifying Gene name
... I am currently having a problem with Identifying gene names. I have the gtf, gff, and sam files. I can identify the gene because I have information about their position and I could just search seqeunce however my list is over a thousand. Is there any way I can do this without doing it one by one man ...
assembly rna-seq written 8 months ago by sicat.paolo200

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