User: sicat.paolo20

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Posts by sicat.paolo20

<prev • 33 results • page 1 of 4 • next >
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Comment: C: Blastall vs Blastn
... Hi, Thank you very much for this. This was really helpful and its amazing how the devs explained the issue and resolution simple terms. Thanks! ...
written 11 months ago by sicat.paolo2030
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Comment: C: Blastall vs Blastn
... Thanks for the heads up. My supervisor sent me this https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/bty833/5106166 to warn me about -max_target_seqs ...
written 11 months ago by sicat.paolo2030
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Comment: C: Blastall vs Blastn
... Thank you very much for the assistance. I think I'll just stick with -num_alignments. Thanks! ...
written 11 months ago by sicat.paolo2030
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Comment: C: Blastall vs Blastn
... Thanks. I'm currently being cautious just to make sure I understand each parameter completely. Would -max_target_seq be the same as having both -num_alignments and -num_descriptions? ...
written 11 months ago by sicat.paolo2030
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Blastall vs Blastn
... Good day everyone, I am currently trying a workflow that was done with blastall version 2.2.26. I wanted to update it and use the 2.8.1 version of blast that we have. I have this one parameter that I am confused with. I'm currently trying to produce a tabular output (blastall -m 8 , blastn -outfmt 6 ...
sequence blast results written 11 months ago by sicat.paolo2030 • updated 11 months ago by lieven.sterck6.4k
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Comment: C: Illegal Division by zero
... Hi thanks to your help and the author's help (He got back to me! :D). You guys helped me what was going on. My stuff had masked sequences and that's what's causing the issue. I didn't get it at first but looking at what you said and what he said helped me dig further into the code. ...
written 14 months ago by sicat.paolo2030
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Comment: C: Illegal Division by zero
... Hi, thanks for the help. I'll try to apply this next. Apologies if I am not good at this. I am trying to pick up this tool and trying it on my data set and the readme's suggested dataset. Both were not working so I'm trying to check if there is a fix for it. I'll try to apply this changes as soon as ...
written 14 months ago by sicat.paolo2030
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Comment: C: Illegal Division by zero
... $features[$oligo+1] I tried redoing this and ensuring that @features does not contain any zero values. It still gives me an illegal division by zero error message. ...
written 14 months ago by sicat.paolo2030
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Comment: C: Illegal Division by zero
... Thanks for the suggestion. I tried the suggestion below first but if that doesn't work, I'll take a look further into this. Thanks! ...
written 14 months ago by sicat.paolo2030
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Comment: C: Illegal Division by zero
... Still not sure what's happening. I tried changing $features[$x] /= $features[$oligos+1]; to $features[$x] /= $features[$oligos]+1; Thanks for the tip. The job is now running a bit further. Hopefully this works properly. Thanks ...
written 14 months ago by sicat.paolo2030

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Popular Question 9 months ago, created a question with more than 1,000 views. For Hisat2 multiple paired end reads
Supporter 14 months ago, voted at least 25 times.
Supporter 14 months ago, voted at least 25 times.

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